Raphanus sativus (radish): 108806405
Help
Entry
108806405 CDS
T06014
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
rsz03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108806405
03083 Polycomb repressive complex
108806405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
108806405
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
108806405
Histone modification proteins
HAT complexes
HATB complex
108806405
HDAC complexes
Sin3A-HDAC complex
108806405
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108806405
PRC2.2
108806405
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
108806405
Heterochromatin formation proteins
Other heterochromatin formation proteins
108806405
Chromatin remodeling factors
NuRD complex
108806405
NuRF complex
108806405
NuRF complex (fruit fly)
108806405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
Beta-prop_DCAF12
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
eIF2A
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
108806405
NCBI-ProteinID:
XP_018434013
UniProt:
A0A6J0JEG1
LinkDB
All DBs
Position
6:complement(44506930..44510276)
Genome browser
AA seq
495 aa
AA seq
DB search
MESDEAAAASPSGGTVTPAPKKRGRKPKIKEEPQTQQQQSGGKMKESGGKKTKQSVDDKY
SQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNRQLLYLSEQTDGSVPNTLVIA
NCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIIATHTDSPD
VLIWDVETQPNRHAVLGAASSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWS
IQDHITTAATDSKSSGSIIKQSDKSESPSVGPRGVYHGHDDTVEDVAFSPTSAQEFCSVG
DDSCLILWDARTGTSPVTKVEKAHDADLHCVDWNPRDDNLILTGSADNTVRLYDRRNLTS
NGVGAPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSDRAAKSPAG
LFFQHAGHRDKVVDFHWNAEDPWTIVSVSDDCETTGGGGTLQIWRMSDLLYRPEEEVLAE
LEKFKSHVMTCASKP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgacgaagcggcagcggcatcgccgagcggagggaccgtgacaccggcgccg
aagaagagaggcaggaaacctaagatcaaggaagagcctcagacgcagcagcagcagagc
ggcgggaaaatgaaggaaagcggggggaagaaaacgaagcagagtgtggacgacaagtac
agtcagtggaaaggtctcgtccccattctctacgactggctcgccaatcataacctcgtc
tggccttccctctcttgcagatggggtccacagcttgaacaagcaacctacaagaaccgc
cagcttctttacctgtccgaacaaactgatggcagtgtgcccaacactctagtcatagcg
aattgcgaagttgttaagccaagggttgctgcagctgagcacatttctcagttcaacgaa
gaagcacgttctccatttgtgaagaagtacaagaccatcattcaccctggagaggttaac
cgaatcagggaactcccacagaacagtaaaattattgctactcacaccgacagtcctgat
gttctcatttgggatgttgaaacccaaccaaaccgtcatgctgttcttggagctgcaagt
tcccgtccggatttgatattaactggacatcaagacaatgctgaattcgctcttgcaatg
tgcccaaccgaaccctttgtcctctctggaggcaaggacaagtcagttgttttgtggagt
atccaggaccacatcacaacggctgctacagattccaaatcatctggatccatcatcaaa
cagagtgataagtctgagagtccttctgttggcccgcgaggtgtatatcatggccatgat
gatacagttgaagatgttgcattcagcccgactagtgcacaagaattttgcagtgtcggt
gacgattcttgccttatactatgggatgcaagaacaggcactagccccgtcacgaaggtt
gaaaaggcgcacgatgctgatcttcattgtgtcgattggaaccctcgtgatgacaatctg
atcctgacagggtctgcagacaacactgttcggttgtatgatcgcaggaacctaacctca
aacggagtcggtgcgcctatctacaaatttgagggccacaaagctgctgttctttgcgtt
cagtggtctcctgataagtcatctgtttttgggagttcggcagaagatggtctcttgaac
atctgggattatgacagggtcagtaagaagtctgatcgtgcagctaaaagccccgctggg
ctcttcttccagcatgctggccacagggacaaagtagttgatttccactggaatgcggag
gacccctggactattgtcagtgtttctgatgactgtgagactacgggtggaggtggaaca
ctgcagatatggcggatgagcgacttgttatacagaccggaagaggaagttctggcagag
ttggagaagttcaagtcgcatgttatgacatgtgcctcgaagccttga
DBGET
integrated database retrieval system
