Raphanus sativus (radish): 108806449
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Entry
108806449 CDS
T06014
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108806449
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_9
PAS_4
HisKA
PAS_8
EH
Motif
Other DBs
NCBI-GeneID:
108806449
NCBI-ProteinID:
XP_056860438
UniProt:
A0A9W3D9R3
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Position
1:2680068..2685296
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AA seq
1125 aa
AA seq
DB search
MSGSRPSHSSEGSRRSRNSARIIAQTTVDAKLHADFEESGSSFDYSTSVRVTGPVVENQP
PRSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAAELLTMASHAVPSVGEQ
GALGIGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSAKPFYAIVHRVTGSIIV
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM
AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV
LQDEKLSFELTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAAPPDSTA
PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT
LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKEKVWKLGITPSEFHLQEIASWLCEY
HTDSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHD
PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGGETADVNT
KIIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPV
DEAIGKHLLTLVEDSSVEIVKRMLENALQGTEEQNVQFEIKTHLSRADAGPISLVVNACA
SRDLRENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCTE
WNPAMSKLTGLKREEVMDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQEAEKV
PFAFFTRGGKHVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL
KALAYIKRQIRNPLSGIMFTRKMMEGSELGPEQRRILQTSALCQKQLSKILDDSDLESII
EGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNDTGEEVMSDTLYGDSIRLQQVLA
DFMLMSVNFTPSGGELTVTASLRKDQLGRSVHLAYLEIRITHTGAGLPEFLLNQMFGTEE
DVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIISAELAAANK
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggtcaaggccgagccattcctccgagggctcaaggcgttcaagaaacagcgct
aggatcattgcgcagaccaccgttgatgcaaagctccatgctgatttcgaggagtcaggc
agttcctttgactactcaacctcggtgcgtgtcaccggacctgttgtggagaaccagccg
ccaagatcagacaaggtgaccacgacttatcttcaccacatacagaagggaaagctgatt
cagcccttcggttgtttgctcgccttggacgaaaagaccttcaaagtcatcgcctacagc
gagaacgctgctgagctcctgacgatggctagtcacgctgttcctagcgttggcgaacag
ggcgctctaggcatagggacagacataaggagccttttcaccgctcctagcgcctctgct
ttgcagaaagcgcttggattcggagacgtctccctcctgaaccccatcctcgtgcattgc
aagacatccgccaagccgttttacgccatcgtgcacagggtcacggggagcatcatcgtc
gacttcgagccggtgaagccttacgaagttcccatgacggctgctggcgctctgcagtcg
tacaaactcgctgcgaaagccatcactaggctgcagtctctccccagcgggagcatggag
aggctttgcgacacgatggttcaagaggttttcgagctcacggggtatgacagggtgatg
gcttataagtttcatgatgatgatcacggagaggttgtctctgaggtcacgaagcctgga
ctggagccttacctcggcctgcattatccagccactgacatccctcaggcagctcgtttt
ctctttatgaagaataaggttcggatgatcgttgattgcaatgcgaaacacgttagggtg
cttcaagatgagaagctctcctttgaactcactttgtgtggctccacgctcagagcgccg
cacagctgccatttgcagtacatggccaacatggactcgatcgcatctctcgttatggcg
gttgtggtaaacgaggaagatggagaaggcgatgctgctgctcctcctgattccaccgcg
cctcagaagagaaagaggctgtggggtctggtggtttgtcacaacacgactccaagattc
gttccgtttcctctgaggtatgcgtgtgagtttctagctcaagtgtttgccatacacgtc
aacaaggaggtggagctggagaatcagatcgtggagaagaacattttacgcacgcagacg
ctcctgtgcgatatgctgatgcgtgatgctcctctgggaatcgtctcgcagagccccaac
ataatggaccttgtgaaatgcgatggagcagctctcttgtacaaagaaaaggtatggaag
ctaggaatcactccgagtgagttccatctgcaggagatagcttcgtggctgtgcgagtac
cacacggactcaactggtctgagcactgatagcttgcacgacgccgggtttcccagagca
ctagctctgggagactcggtgtgtgggatggcggctgtgagaatatcatcgaaagacatg
atattctggttccgttctcacacagctggtgaagtgagatggggaggtgcaaagcatgat
ccagacgatagggatgacgcgaggagaatgcacccgaggtcatcgttcaaggctttcctc
gaagtggtcaagacgaggagtttgccttggaaggactatgagatggatgccatacactcc
ttgcagcttattctgaggaatgctttcaaggatggtggcgaaactgctgatgtgaataca
aagatcatccactcgaagctgaatgatttaaaaatcgatggtatacaagaacttgaagct
gttacgagcgagatggttcgtttgatcgagactgctactgtgccgattttggcggttgat
tctgatggattggttaatggttggaacacgaaaattgctgagctgactggtcttccggtt
gatgaagccatagggaagcatctcctcacgcttgttgaggattcttcagtggagatcgtt
aagaggatgctagagaatgcgctacaaggaacggaggagcagaatgttcaatttgagatc
aagacacatctgtcaagagctgatgctggacctataagtttagttgttaacgcatgcgca
agtagagatctccgtgagaacgttgttggtgtgtgctttgtagctcatgatcttactgga
cagaagactgtgatggacaagttcactcggatcgaaggtgattacaaggcgatcgtccag
aatccaaacccgctgatccctcccatatttggtaccgacgagttcggttggtgcacggag
tggaatccagcgatgtcaaagttaaccggtttgaagcgagaggaagtgatggacaagatg
ctgttaggagaagtgttcgggactcagaagtcgtgttgtcgtctgaagaatcaagaagcg
tttgtgaaccttgggattgtgctgaacaacgctgtgacgagtcaggaggcggagaaagtg
ccatttgctttcttcacgagaggtggaaagcacgtggagtgtctgttgtgtgtgagtaag
aaactggacagggaaggtgtggtgacaggggtcttctgtttcctgcagcttgctagccat
gagctgcagcaggccttgcatgttcagcgtctagctgagaggactgcgttgaagaggtta
aaggctctagcttacataaaaagacagatcaggaatccgctttccggtatcatgtttaca
aggaagatgatggaggggtctgagttaggaccggagcagagaaggattctgcagactagc
gctttatgtcagaagcaactcagcaagatcctggatgattctgatctggaaagcatcatt
gaagggtgcttggatctggaaatgaaagagttcagcttgaatgaagtgttgactgcttcc
acaagtcaagtaatgatgaagagtaacggaaagagcgttaggataacaaatgatacagga
gaagaagtgatgtctgatactttgtatggagacagtatcaggcttcaacaagtcttggca
gatttcatgctcatgtctgttaactttacaccgtccggaggagagctaactgttacagct
tccctgaggaaagatcagctggggagatctgtgcatcttgcttatttagagatcagaata
acgcatacaggagctgggctaccagagtttttgctgaaccaaatgtttggaactgaggaa
gacgtgtcggaggaaggactaagcttgatggttagcaggaaactagtgaagctgatgaat
ggagatgttcagtacttgagacaagctgggaaatcgagtttcattatctctgcggaactc
gctgcggccaacaagtag
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