Raphanus sativus (radish): 108806510
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Entry
108806510 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108806510
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108806510
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rsz04812
]
108806510
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
108806510
Membrane trafficking [BR:
rsz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
108806510
Cytoskeleton proteins [BR:
rsz04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
108806510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
Vps4_C
AAA_22
NPHP3_N
AAA_16
AAA_14
Mg_chelatase
TIP49
AAA_2
DUF815
RNA_helicase
IstB_IS21
nSTAND3
ABC_tran
AAA_25
AAA_24
DUF4368
AAA_33
NACHT
Motif
Other DBs
NCBI-GeneID:
108806510
NCBI-ProteinID:
XP_018434154
UniProt:
A0A6J0JH22
LinkDB
All DBs
Position
6:complement(52653878..52656757)
Genome browser
AA seq
495 aa
AA seq
DB search
MSFFRDIIDSFSSILTEEHNHRHEESNNVSSSSSGSSMNVVDGAAVTNERVAYKLKGYFE
LAKEEIAKGVRAEEWGLREDALLHYRNAQRIMTEATSTPSPSYITSNEKEKVRSYREKIS
KWQSQVSERLQALGKRAGVGMSENKRSVTPPSSASASVYSTASNRRVSSPKTSSLPRGGG
VGMARSLPRDGTTNNPKPANGYDDKLEEMINTTIVDRSPSVKWDDVAGLDGAKQALLEMV
ILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGE
AEKLVKTLFQVAISRQPSVIFMDEIDSIMSTRSISENEASRRLKSEFLIQFDGVTSNPDD
LVIVIGATNKPQELDDAVLRRLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSGGDIDKIV
RETEGYSGSDLQALCEEAAMMPIRELGADILTIQANKVRPLRYDDFRKSMAVIRPSLSKS
KWEELERWNSEFGSN
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcttcagagatataatcgattcgtttagctcaatcctcaccgaagaacacaat
catcgtcacgaagaatctaataacgtatcatcatcttcatctggctcctccatgaacgtt
gtcgatggagctgcggttacaaacgaacgggtcgcgtataagctcaaaggatacttcgaa
ttggcgaaagaggagatcgctaaaggcgttagagcagaagagtggggtttacgcgaagac
gcgcttcttcattacagaaacgctcagaggatcatgaccgaagctacctccaccccttct
ccttcctatatcacttccaatgagaaggagaaggtgagatcgtatagagagaagatttct
aaatggcaaagtcaagtctctgagagattgcaagctcttggtaaacgtgcaggtgttgga
atgtctgagaataagagaagtgtaacacctccttcttcagcttcagcttcagtttactcg
acagcgtctaatagaagagtttcatcaccaaagacttcttcacttcccagaggtggcggc
gttggaatggcgaggagcctccctagagatggtactactaacaacccgaaacctgcgaat
ggatacgatgataagttagaagagatgatcaacacaactatagtggacagaagtccatct
gtgaagtgggatgatgtcgctggacttgatggagctaaacaagctttattggagatggtt
atattaccggcgaaacgaagagatttgttcactggtctccgaagaccagctagaggtctg
cttctctttgggccacctggaaatggaaaaacaatgcttgccaaggcagttgcttccgag
tcacaggcaacattcttcaacgtctcagcatcttcattgacatcaaaatgggtgggtgag
gctgaaaagttagttaaaacgttgttccaagttgccatatccagacaaccctctgtgata
tttatggatgaaatagatagtataatgtctacaaggtcgatcagtgagaacgaagcaagc
agaaggttgaaatcagaattccttatccagtttgatggtgtgacttctaatcctgatgat
ttggtcattgtcatcggagctacaaacaagccacaggagttggatgatgcagtgcttaga
agactggtaaagagaatctacgtaccgttgccggattcaaacgtcagaaagcttcttttt
aaaactaaactgaagtgccagcctcactctttatccggtggcgacattgataaaatcgtt
agagaaaccgaaggatactcaggaagtgatctacaagcgttgtgtgaagaagctgcaatg
atgccaatcagagaactcggtgcagatattctcaccatccaagcaaataaagtgagaccg
ctaaggtatgatgattttaggaagtcaatggcagtgatcagaccaagcttgagtaaaagc
aaatgggaagagcttgagcgttggaactctgagtttggctctaattga
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