KEGG   Raphanus sativus (radish): 108806750
Entry
108806750         CDS       T06014                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03082  ATP-dependent chromatin remodeling
rsz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108806750
   03083 Polycomb repressive complex
    108806750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rsz03036]
    108806750
Enzymes [BR:rsz01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108806750
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     108806750
   HDAC complexes
    Sin3A-HDAC complex
     108806750
    BRAF-HDAC complex
     108806750
    REST complex
     108806750
    SHIP complex
     108806750
    MiDAC complex
     108806750
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108806750
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108806750
  Chromatin remodeling factors
   NuRD complex
    108806750
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 108806750
NCBI-ProteinID: XP_056846000
UniProt: A0A9W3C3A2
LinkDB
Position
6:41736346..41739286
AA seq 426 aa
MRSKDKISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM
AQFHSPDYVEFLQRINPENTDLFPNEMARYNLGEDCPVFEDMFEFCQIYAGATIDAARRL
NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLRDGIDDSSFNRLFRA
IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNIPLLVTGGGGY
TKENVARCWTVETGILLDTELPNEIPDNDYIKYFGPDYSLKIPGGHIENLNTKSYISTIK
AQILDNLRYIQHAPSVQMQEVPPDFYIPDFDEDQQNPDVRVDQRSRDKQIQRDDEYFDGD
KDNDAS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgcggtccaaggacaaaatctcctacttctatgatggagatgtagggaacgtctacttt
ggtccgaatcacccaatgaagcctcacaggctttgtatgacccatcatcttatccttgca
tatggcctccacagcaagatggaagtttatcgtccacacaaggcataccctatcgagatg
gcccagttccattccccagactatgtcgagttcctccaacgtatcaaccctgaaaacact
gatttgtttcccaacgaaatggctagatataatttaggagaggattgtcctgtctttgag
gatatgtttgagttttgtcaaatttatgccggcgctaccatagatgctgcacgcagatta
aacaacaaactatgtgacattgccataaactgggcgggcgggttgcaccatgctaaaaaa
tgcgatgcgtctggtttctgttacatcaacgatctcgtgctaggtattctcgagctcttg
aaacaccatcctcgtgtgctctacattgatatagacgtccatcacggtgatggagtcgaa
gaggccttttactttactgacagagtgatgactgttagctttcacaagtttggggataag
ttctttccaggaaccggcgatgttaaggaaataggagaaagggaagggaagttttacgcc
ataaatgttccgctcagggatggtattgatgacagtagtttcaaccgtctcttcagggcg
ataatttcgaaggtggttgagatatatcagccaggtgcaatagtacttcagtgtggagca
gattcactagcaagggatcgactaggatgctttaatctctctattgatggacatgctgaa
tgtgttaaatttgtcaagaagttcaatattcctttgctggtgactggaggtggagggtac
acaaaggagaacgtagctcggtgttggaccgttgagactggcattcttttggacactgaa
cttcctaatgagattccagataatgattacataaagtattttgggccggattattcattg
aagattcctggtggtcacattgagaatctaaatacgaaatcgtatatcagtacgataaaa
gcacagattttggataatttgcgatacatccagcacgctccaagcgtgcagatgcaggag
gttccaccggatttctacataccggattttgatgaagaccaacaaaatccagatgtgcgt
gtggaccagcgttcgcgggataagcagattcagagggacgatgaatatttcgatggtgac
aaggataacgatgcgtcgtag

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