Raphanus sativus (radish): 108806773
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Entry
108806773 CDS
T06014
Name
(RefSeq) putative pectate lyase 11 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108806773
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108806773
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108806773
NCBI-ProteinID:
XP_056844274
UniProt:
A0A9W3BYC9
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Position
6:complement(16919083..16922103)
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AA seq
412 aa
AA seq
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MISYSNNPFVCTFVFLLSIGNTIAFSSSSLPHVQDPNLVVDEVNRSLFNASRRSLAYLSC
RTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKHAIGGRGGRFYVVTDPGNDDPVNPRPGT
LRHAVTQEEPLWIVFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCIKIHYATNIII
HGINIHDCKPGSGGMIKDGPHHTGWWVPSDGDAVAIFGGKHVWIDHCSFSNCDDGLIDAI
HGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFH
VVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRNWNWRSEG
DMLLNGAYFRQSGAGASSTYARASSLSARPSSLVGSITTAAGTLSCRRGRRC
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgtattctaataatccttttgtttgcacttttgtttttctcctatcaattggc
aacacgattgcattctcctcgagttcgttgcctcatgttcaagatccgaatctagtagtt
gacgaggtcaatagaagtctattcaatgcgtcaaggaggagcctggcctacctatcctgt
agaaccggaaatcctatcgatgactgttggcgttgcgatccaaattgggagaaaaaccgc
caacggctagccgattgtgctatagggtttggcaaacacgctattggaggccgcggtggc
cgattttacgtggttacagatccgggcaacgacgatccagtaaatcctagaccgggaact
ctaagacatgcggtcacgcaagaagagccattatggatcgttttcaagagagatatggtc
attaggctcaagaaagaactgattatcacatcttttaagacgattgatggtagaggctca
agtgttcacataaccgatggaccatgcatcaagatccactatgcaactaacatcatcatt
catggaattaacatccatgactgcaaaccaggatcaggtggcatgataaaagatggccca
catcacaccggatggtgggtcccatcagatggagacgcagtggctatatttggaggaaag
catgtgtggatcgaccattgctcgttctccaactgcgatgacggtctcatagacgccata
catggttcgacggctataaccatatcgaacaaccacatgacgcaccatgacaaggtcatg
cttttggggcacagcgatagctacacacaggacaagaacatgcaagtcaccattgccttt
aatcatttcggtgaagggcttgtgcaaaggatgccacggtgcaggcatggatatttccac
gtggtgaacaatgattatactcactgggaaatgtatgccatcggtggaagcgcttctccg
acgatatacagccaaggcaataggtttcttgctcctaatacccggtttaataaagaggtt
acaaaacatgaagatgcacccgaaagcaaatggagaaattggaattggagatcggaaggg
gatatgttgttgaacggagcatatttccggcaatccggtgctggagcttcatcgacttat
gcaagagcttctagtctaagtgcgaggccatcatcgcttgtgggttccatcacgacggca
gcaggaacactaagttgtcggcgaggtcgtcgctgttga
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