KEGG   Raphanus sativus (radish): 108806902
Entry
108806902         CDS       T06014                                 
Name
(RefSeq) LOW QUALITY PROTEIN: cell division cycle 5-like protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108806902
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108806902
   03400 DNA repair and recombination proteins [BR:rsz03400]
    108806902
Spliceosome [BR:rsz03041]
 Complex B
  Other components
   Prp19 complex
    108806902
 Complex C
   Prp19-CDC5 complex
    108806902
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    108806902
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 TPR_HPS5_insect GLTSCR1
Other DBs
NCBI-GeneID: 108806902
NCBI-ProteinID: XP_018434617
UniProt: A0A6J0JFK8 A0A6J0JG59
LinkDB
Position
1:complement(2520299..2523563)
AA seq 853 aa
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT
EWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYEAADDPR
KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR
LASLQKRRELKAAGIGNSHRKRKRKGIDYNAEIPFEKRAPXGFYDTADEDRPADQVKFPT
TIEDLEGKRRADVEAQLRRQDVARNKIAERRDAPAAILQANKLNDPEAVRKRSKLMLPPP
QISDHELEEIAKMGYASDLLAENEELTEGSAATRALLANYSQTPRQGTTPMRTPQRTPSG
KGDAIMMEAENLARLRDSQTPLLGGDNPELHPSDFTGVTPRKKEIQTPNPMLTPSMTPGG
AGLTPRIGGASLTPRIGGTPSREGSSFAMTPRGTPFRDELHINEDMDMHESAKLERQRRE
EARMSLRSGLTGLPQPKNEYHIVAQPPPEESEEPEEKIEEDMSDKIAREKAEEEARYQAL
LRKRSKVLQRDLPRPPAASLELIRNSLLSANRDKSSVVPPSSVDVADEMVREELLQLLEH
DNAKYPLDEKAEKKKGAKNRANSSGSQVPAIEDFEENELLEADKMIKEEAQFLCAAMGNE
SKTFDEFVVAHDDCVKDIMYFPTRNAYGPSSVAVKAEKVAALQVEMENAKKKMEEDEKKA
EHMKAKYKTYTKGHEKRAETVWSQIEASLKQIEIGGTEVECFKALKRQEEMAASFRKKNL
EEEVIKQKETERKLQARYGELLSTLEKAEELMVGFRAQALKQADVVEDSHEPKEAKLATG
EEVDVAISMDASA
NT seq 2562 nt   +upstreamnt  +downstreamnt
atgaggattatgatcaaaggaggtgtgtggaagaacaccgaagatgagatcctcaaagcc
gccgtcatgaagtacggcaagaaccaatgggctcggatctcctcccttcttgttcgcaag
tctgccaaacagtgtaaagctcgctggtacgagtggctcgatccttctatcaaaaagact
gaatggaccagagaagaagatgagaagcttctccatctcgcgaagcttctacctactcag
tggagaaccatcgctcccattgtgggacgaacaccgtctcagtgcctcgagaggtacgag
aagcttctcgatgcagcttgcactaaggacgagaattacgaagcagcggacgatccacgg
aagctgcgtcccggcgagattgatcccaatccggagtcgaagcctgctcgtcctgatcct
gtggacatggacgaagacgaaaaggagatgctttcggaagcgagggcgaggctggctaac
actaggggaaagaaggcgaagaggaaagctagagagaagcagctggaggaagctagaagg
cttgcgtctctgcagaagaggagagagttgaaagctgctgggattggtaacagccatagg
aaaaggaagcgaaaggggattgattataacgcggagattccttttgagaagagggcgccc
ngcgggttttatgacactgcggatgaagatcgtcctgctgaccaagtgaagtttccgacc
accattgaggatcttgaagggaagagaagggctgatgtggaagcgcagttacgcaggcaa
gatgttgcgaggaacaagattgctgagagaagggatgctccggcggctatattgcaagcg
aacaagctgaatgatccggaagctgttaggaagaggtcaaagctaatgttaccaccaccg
cagatttcagaccacgagcttgaggagattgcgaagatggggtatgctagtgaccttctt
gcggaaaatgaggagctgactgaaggcagtgctgctactcgtgcgcttttggcgaattac
tcgcaaacaccaaggcaaggaacgacacccatgaggacgcctcaaagaactccttctggt
aaaggtgatgctattatgatggaagctgagaatctggctaggttgagagactctcagaca
cctttgctaggaggagataatcctgagttgcacccttctgactttactggggtcactccg
aggaagaaagagattcaaacgcctaatccaatgttgaccccatcgatgacgcccggtggt
gctggccttactcccagaattggtggtgctagtcttactcccagaattggtgggacgcca
tcaagggagggttcttcttttgctatgacacccagaggtactcccttcagggatgaactt
cacataaatgaagatatggacatgcacgaaagtgcaaaacttgagaggcagagacgagag
gaagctaggatgagcttacgctctggtctgactgggcttcctcagccaaagaatgaatac
catatagttgcacaacctcctccggaagaaagtgaagagccagaagagaaaattgaggaa
gacatgtcagacaagatagctagggaaaaggctgaggaggaagcaagataccaagccctc
cttaggaaaaggtccaaggttttgcagagagaccttcctagacctccagcagcttcgttg
gaactaattaggaattctttgctttcagcgaaccgagataaaagttctgttgttcctcct
agttcagttgatgttgcagatgaaatggtaagagaggagcttctacagttgctggagcat
gataatgcaaagtatcctcttgatgagaaagctgagaaaaagaaaggagccaagaaccgt
gctaacagttctggctctcaagttcctgcaattgaagactttgaggaaaatgaactccta
gaggctgacaaaatgattaaggaggaggcacaatttctttgcgcggcaatgggaaacgag
agcaagacatttgacgagttcgtagtagctcacgacgattgcgtaaaggatatcatgtac
ttccccactcgaaatgcctacggaccctcaagtgttgccgtgaaggcagagaaagttgca
gcgttgcaagtggagatggagaatgcgaagaaaaagatggaggaagatgagaagaaggca
gaacacatgaaggctaagtataaaacttatacaaagggtcatgagaaaagggcagagact
gtgtggagccaaatagaggcgagtctaaagcagattgagattggtggaacagaagtggag
tgctttaaagcattgaagaggcaagaagagatggctgcgtctttcaggaagaagaatctg
gaggaagaagtgataaagcaaaaggagacggagcggaaactgcaagcacgctatggggag
ctgttgtcaacgcttgaaaaagcagaggagttaatggtcggattccgagcacaagcactg
aaacaggcggatgtcgttgaggattctcacgaaccaaaagaagctaaactagccactgga
gaggaagtggacgtagccatttccatggacgcttctgcgtaa

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