Raphanus sativus (radish): 108807010
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Entry
108807010 CDS
T06014
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108807010
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108807010
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GFIT
Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
108807010
NCBI-ProteinID:
XP_018434747
UniProt:
A0A6J0JGI9
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Position
1:419258..420977
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AA seq
265 aa
AA seq
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MYLLKKNADSFGLLRRTSITFNGANDVVISGVKSMNSQMSHMTLKGCTNVAVRNIKLVAP
GNSPNTDGFGVQSSTGITLTGSTVQTGDDCVSIGPGTRNFLISKLNCGPGHGVSIGSLAK
TLNEDGVENVTLSNSVFTGTQNGVRIKSWARASTGFVNKVFFQNLIMKNVQNPIIIDQNY
CPTHQGCPTEHSGVKISQVTYRNIQGTSATQQAMNLACSKTNPCTGITLQDIKLTYNKGT
PATSYCFNARGTNLGVIQPTSCLNR
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttttgaagaaaaacgctgattcctttggacttttgagacgcacgtccataacg
ttcaacggggcaaacgacgtggtcataagtggagtgaaatcgatgaacagtcagatgtcc
catatgaccctcaagggttgcaccaatgtggctgtccgtaacatcaagctagtggctccc
ggaaacagcccaaacaccgacggttttggcgttcaatcctccacaggaatcacactcact
ggaagcacagttcagaccggagacgattgtgtttctatcggccctggcacccgcaacttc
ctcatctccaaacttaactgtggcccaggtcacggggttagtattgggagcttggcaaag
acattgaacgaagatggagtagagaacgtgacactatcgaattcagtattcaccggaaca
caaaacggcgtgaggatcaagtcgtgggcgagggcgagtactggattcgttaataaagtc
ttcttccaaaacctaatcatgaagaacgtccaaaaccctatcataatcgaccaaaactat
tgtcctacccaccaaggttgccctaccgagcattcaggggtgaagattagccaagtgacg
tataggaacatacaaggaacgtccgcgacacagcaagcgatgaatctggcatgcagcaag
accaatccatgcacaggaatcacattacaagatattaagcttacttacaacaaaggaact
cctgctacttcctactgtttcaatgctagagggactaatctcggtgttattcaacctacg
agttgtctcaaccgataa
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