Raphanus sativus (radish): 108807153
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Entry
108807153 CDS
T06014
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
rsz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108807153
03460 Fanconi anemia pathway
108807153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
108807153
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108807153
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
108807153
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Topoisomerases
108807153
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
108807153
FA (Fanconi anemia) pathway
108807153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
zf-C2H2_10
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
108807153
NCBI-ProteinID:
XP_018434910
UniProt:
A0A6J0JH12
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Position
6:complement(12491412..12497114)
Genome browser
AA seq
927 aa
AA seq
DB search
MSRRGGGPVTVLNVAEKPSVAKSVAGILSRGSYRTREGRSRYNKIFEFDYAINGQPCRMM
MTSVIGHLMELEFADRFRKWHSCDPADLYEAPVMKHVPEDKKDIKKTLEEEARRSDWLVL
WLDCDREGENIAFEVVDVCRAVKQNLYIRRAHFSALIDREIHEAVQNLREPNQLFAQAVD
ARQEIDLRIGASFTRFQTMLLKDRFSIDSTGDEERSRVISYGPCQFPTLGFIVERYWEIQ
AHEPEEFWTINCSHESSEGLATFNWMRGHLFDYAAAAILYEMCVLEPTATVMNVPHPREK
FKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLRAM
VEEQTRHPAWGPYAQRLLEPEGGLWRNPGNGGHDDKAHPPIHPTKFSSGESNWSRDHLNV
YELVVRHYLACVSQPAVAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPV
YEKGQQFIPTRLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATK
NANTRFSPTNLGEALVMGYDDMGYELWKPNLRAIMEHDMNEVSVGNKTKAEVLETCLQQM
KACFLDARVKKTKLLEAMTIFFERSNNTDEGDNHTAGEVVRRCNLCNESDMALRKNQDGN
FMVGCMSYPQCRNAVWLPGPTLEASVTTDICQSCGPGPVYKIRFKFRQIRIPPGFDVNHL
GCVGGCDDVLKQLIDICGTGSRSQARAAPGATPNNVRGSNIRQNNNVCVHCQQGGHTSAN
CPTRASGYRNPRTTGTNPRNDETTVSCTTCGTPCPIRTANTEANRGRKFFSCPTQGCNFF
TWEDSISNGTGNATTGSNSGGSGRRGRGRGRGRESRGGGQSGGGRAGGGTSFVSATGEPV
SGRRCFSCGDPSHFANACPNRNSNGNF
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcgaggcggtggacccgtgacggtactgaacgtggcggagaaaccttcggtg
gcgaagtcagtggctgggattctatcccgtggaagttaccggactcgggagggtaggtct
cggtacaacaaaatcttcgagttcgattacgcaatcaacggccaaccgtgccgtatgatg
atgacctccgtcatcggtcacctgatggagctcgagttcgctgatcgcttccgcaaatgg
cactcctgcgaccccgcggatctgtacgaagctccggtcatgaaacacgtccccgaggat
aagaaggatattaagaagacgttggaggaggaagcaaggaggagcgattggcttgtgctg
tggcttgattgtgatagggaaggtgagaacattgcatttgaagttgtggatgtttgtaga
gctgtgaaacagaatctttacatacggagggctcatttctctgcgttaattgacagggaa
attcatgaagcagttcagaatctcagagagcctaatcagttgtttgctcaggctgttgat
gctagacaagaaatagacctacgcattggtgcttctttcactaggtttcagactatgctt
ctgaaagataggttctcaattgactccacgggtgatgaagagaggagtcgtgttataagt
tatggtccttgtcagtttcctacacttggctttattgttgagagatactgggagattcag
gcacatgaaccagaggagttttggacaatcaactgttctcacgaatcatcagaaggcctt
gccacctttaattggatgcgtggtcatctctttgattatgctgcagctgctatattatat
gagatgtgtgtcctggaacctactgccaccgtaatgaatgtccctcatccaagggaaaaa
tttaaataccctccttatccgttgaacaccattgaacttgaaaaacgcgcttcaagatac
ttccgcctgagttctgagcataccatgaaggtggcagaagaattatatcaggctggtttc
atcagctatcctcgtacagagacagattctttttcaagcaggactgatttacgtgccatg
gtggaggaacaaacaagacatcctgcatggggtccatatgcacaaagattattagagcct
gaagggggactctggagaaacccggggaatggtggtcatgatgacaaggctcacccaccc
attcacccaacaaagttttctagcggagagtctaactggagtagggatcaccttaacgtt
tatgagcttgttgtccgccattacctagcatgtgtttcccagccagcagttgcggctgaa
actacagtcgaaattgatattgctggcgagcgcttttctgcatctgggagagcaatatta
gctaaaaattaccttgaggtgtaccgctttgaatcttggggaggttcagtgattccggtg
tatgaaaaggggcagcagtttatcccaacacgtttgactctggattcagctgtgacaagg
ccaccaccgctattgtgtgaagctgacttacttagttgtatggacaaggcaggcattggt
actgatgcgacaatgcacgaccacataaagaaactccttgatcgaggttatgctacaaag
aatgctaatacgcggttttctccaaccaacctgggtgaggcgcttgttatgggatatgat
gacatggggtatgaactttggaaaccaaacctcagagccatcatggaacatgatatgaat
gaagttagtgtcggcaacaagactaaagctgaagttctggaaacttgtttgcagcaaatg
aaagcttgtttcttagatgcaagggtcaaaaaaacaaagcttctagaggcaatgacaatt
ttctttgaaagatctaataacactgatgaaggtgacaatcatacagctggtgaagttgtc
cggcgatgcaacctttgcaatgaatcagatatggcgctcaggaagaaccaggatggcaat
tttatggttggatgcatgagctatcctcagtgtcggaatgcagtttggcttcctggacct
acactggaagcatctgtcactactgacatttgtcaatcttgtggtccaggtcctgtctac
aagatacgtttcaagttccgtcagatcagaattccaccaggctttgatgttaatcacttg
ggctgtgttggtggctgtgatgacgttcttaaacagttgattgacatatgtggaactgga
tcccgttctcaagcaagggcagcaccgggtgcaactccaaacaatgtccgaggaagcaac
ataagacagaacaacaacgtctgcgtacactgtcaacaaggaggacatacttctgccaat
tgtcccacacgagcttcaggatatcgaaatcctcgtaccactggaacaaatccgagaaac
gatgaaactacagtatcatgtacaacttgtggaacaccatgtcctatacgtacagccaac
acagaagctaacaggggaaggaagttcttctcatgtccaacacaaggttgcaatttcttc
acatgggaagatagcatcagcaacggtactgggaatgcaacaacaggttctaatagcggc
ggaagcggtagacgcggccgtggtcgtggtcgtggccgtgaaagtagaggcggtggccaa
agcggtggagggcgtgccggtggtggaacaagctttgtttctgcaactggagagccagtg
agtggtagaaggtgcttctcatgtggtgatccttcgcattttgccaatgcttgccctaac
cgtaactcgaacggtaacttctag
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