Raphanus sativus (radish): 108807210
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Entry
108807210 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108807210
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
rsz03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108807210
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108807210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108807210
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108807210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
108807210
NCBI-ProteinID:
XP_018434970
UniProt:
A0A6J0JH68
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Position
1:complement(5353473..5356318)
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AA seq
591 aa
AA seq
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MSQENAGYGDNHKLLHHQGSGTIPALADEELMGEDDDYDDLYSDVNVGEGFFQAHNQPQT
PAAQVGGGSLQPPQNSNVSEPRMAVVSGGGVEGKYHHNGMMSGPETRSDAYPQQGSSFGS
KGMNVDVQSNQPNKVNPPQGSTSIVLNTHSFSGNAVVNVPAPEPTPVHNNPYGGGPPPQG
AQQIPVSQTSVNPNAMVNRSPTTQPFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVK
EIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFVFNGKACVVAFASPETLKQMGAN
FTGRNQGQNQMQNRRPLNEGMGRGNNNNNNNNNNMNTQNGDGGRNYGRGGGFARGGQGMG
NRGGHWGGAARGRGINNMANGAGAGPYGPGLAGPAFGGMMHPQGMMGAGGFDPTFMGRGA
GYGGFPGLAYPGMPQPYPGVNPMGMVGIAPHVNPAFFGGAGMGTMGNSGMNGVHAAGMWN
EASGGGGGGEEGGSEYGGYEDENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHREE
KDSHREYRRRDSEEYDRGQSSSKSRSRSRMSEDDHRSRSRDADYGKRRRGD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagaaaacgctggttatggagataatcacaagctactacaccaccagggaagc
ggtactattcctgctctagctgatgaagaactcatgggagaagatgatgactacgatgat
ctctacagcgatgttaatgttggtgagggtttcttccaagctcacaatcaacctcaaaca
ccagcagctcaagtcggtggtggaagtcttcaacctcctcagaacagtaatgtttctgaa
ccgagaatggctgttgtttccggaggtggagttgaagggaagtatcatcataatgggatg
atgagtggacctgagacgagatcagatgcttatccacaacaagggtcttcttttggatcc
aaagggatgaatgttgatgtccaatccaaccaacccaataaagtcaatccaccacaagga
tcaacatctattgtgttgaacacacatagtttttcagggaacgcggtggtgaatgtgccc
gcgccggagccgacgcctgtgcataacaacccctacggtggtggtcctcctcctcaaggt
gctcaacagatccctgttagccagacgagtgtgaatccaaatgcaatggtaaacagaagc
ccgacgacgcagccgtttgttgtggacaatgggaacaccatgcttttcgttggagagtta
cactggtggacgacggatgcagagatcgagagtgtgctttctcagtatggaagagtcaaa
gagatcaagttttttgacgagagagttagtggtaaatccaaagggtattgtcaggttgag
ttttatgattcagctgctgctgccgcttgcaaagaaggaatgaatggttttgttttcaac
ggtaaagcatgtgttgtggcctttgcttctcctgaaacactgaagcagatgggagctaat
ttcactgggaggaaccaaggacagaaccaaatgcaaaacagaaggcctctgaatgaggga
atgggaagaggtaacaacaataacaacaacaacaacaacaacatgaatactcaaaatgga
gacggtggaagaaactatgggagaggaggtgggtttgcacgtggtggccaaggaatggga
aaccgtggaggtcattggggtggtgcagcgagaggaagagggataaacaacatggctaac
ggtgcaggtgctggaccgtatggccctggacttgctggtccagcgtttggtggtatgatg
catcctcagggtatgatgggagctggtgggtttgatcctacattcatgggtcgtggtgct
ggttatggagggtttccaggtcttgcttaccccgggatgcctcaaccttatcccggtgtg
aatccaatgggaatggttgggattgctcctcacgttaatcccgcctttttcggtggggcg
ggaatgggaacgatggggaactcagggatgaacggagttcatgcagcagggatgtggaac
gaggctagtggaggaggaggcggtggtgaagagggtggttctgaatacggtggctatgaa
gatgaaaaccaagagaaagaagagaagcagccatcacgagagaaagaacgagctaccaca
gaacgtgactggtctgagagcagtggtggtgatagaagacacaagagtcaccgcgaagag
aaagatagtcaccgcgagtataggcgccgtgattctgaagagtacgatagaggacaatct
tcttccaagtctcgaagcagatcaagaatgtcggaagatgatcataggtccaggtcaaga
gatgctgactacggaaagagaaggcgtggagactga
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