KEGG   Raphanus sativus (radish): 108807696
Entry
108807696         CDS       T06014                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108807696
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108807696
Spliceosome [BR:rsz03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108807696
 Complex B
    108807696
 Complex C
   U2 SnRNP specific factors
    108807696
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 108807696
NCBI-ProteinID: XP_018435452
UniProt: A0A6J0JII9 A0A6J0JIJ3
LinkDB
Position
1:6544047..6547060
AA seq 785 aa
MFSSSKILPLEAPPTDGNLGPLPPSQLTEQEAEERELQNSSSNQAAPVESVATHTRTIGI
IHPPPDIRSIVEKTAQFVSKNGLEFEKRIVASNAKNAKFNFLTSSDPYHAFYQHKLAEYR
AQNQDGAQGNDDDTDGQNLQLDATGGGGGDGEAGEGQADLQAQFRVPPKPLEPPEPEKYT
VRLPEGITGEELEYIKLTAQFVARNGKSFLTGLQSRESNNPQFHFMKPTHSLFSFFTALV
DAYFDVLKPPEDLKEKLRKSAADLTTVLERCLHRLEWDRSQEQQRKKEEDEKEQERVQMA
MIDWHDFVVVESIDFADEEDDELPPPMTLEDVIRRSKVSAAMEEDEVVEPGKEVEMEMDE
EEVRLVAEGMRAANLEANGGSVKIESLNDEEAPMRIVKNWKRPEDRIPTERDPTKVVISP
ITGELIPISEMSEHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDI
FGTTEEEVSNAVKAEIEKKKDEQPTQVIWDGHTGSIGRTANQALAQNANGEEQYGDPNSF
PGPAALPPPRPGVPIVRPLPPPPNLALNLPRPPPSVQYPGPPRPLGVPMMQPMHPQHQLS
MPGPPGHQQMMMNRPPPMQHGMPVPPPPGSQFAHHQVPRPYGQLPPPMHGMMQPPPMHGM
PPPPPHEEAPPPLPEEPEPKRQKFDESALVPEEQFLAQHPGAATIRVSVPNVDDGQVIEI
TVQSLSENVGSLKEKIAGETQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER
GGRKR
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgttcagttcgtcgaagatactgcccctcgaggctcctcccaccgacgggaacctcggt
ccacttcctccgtcgcagctaacggagcaggaagccgaagagagagagcttcaaaacagc
agctcgaatcaagctgctccggtggagtccgtagcgactcacacgaggaccatcggaatc
atccacccgcctcccgatatcagaagcatcgtagagaagactgctcagttcgtctccaag
aacggattggagttcgagaagaggatcgtcgctagcaacgccaagaacgcgaagttcaac
ttcttgacgagctcggatccttatcacgccttttatcagcacaagctcgctgagtaccgt
gctcagaatcaagatggagctcagggtaatgatgatgatactgatggtcagaatctccaa
cttgatgctactggtggtggtggtggtgatggtgaagcaggtgagggacaagctgatctt
caggctcagtttcgggttcctcccaagcctttagaacctccggagcctgagaagtatacg
gttagacttcctgaagggattacaggcgaggagcttgagtacattaagctcacggcgcag
tttgtggcgcggaatgggaagtctttcttgactgggttgcagagtagagagagtaacaat
cctcagtttcattttatgaagccgactcatagcttgttctcttttttcactgctctggtt
gatgcgtatttcgatgtgttaaagcctccggaagacttgaaggagaagctgaggaagagc
gctgctgatttgacaactgttcttgagcgctgtttgcatcgtcttgaatgggatcgttct
caggagcagcagaggaagaaggaagaggacgagaaagagcaggagagagtgcagatggct
atgattgattggcatgattttgtggttgttgaatcgattgactttgctgacgaggaggac
gatgagttgccaccgcctatgacgctcgaggacgtcataaggaggagcaaagtatcggca
gccatggaagaagatgaagttgtggagcctggcaaggaagttgagatggaaatggatgag
gaagaagtcaggctcgttgcggaaggaatgagagcagccaacttggaagcgaatggtggc
tctgtgaagattgaaagtttgaacgatgaggaagcaccaatgaggattgttaagaactgg
aagaggccagaagataggatcccgacagagagagatcctactaaagttgttatatctcca
attactggcgagctgattcccattagcgagatgtctgagcacatgcggatttcgcttatt
gatcctaagttcaaagagcagaaggatcggatgtttgctaagattcgtgagactactctt
gcacaagacgacgagattgctaagaacatagtgggacttgcgcgtctgcgtcctgatatt
ttcgggacaactgaagaagaagtctcaaatgctgtaaaagcagagattgagaagaagaaa
gatgagcagccaacccaagtaatatgggatggtcacacaggaagtataggtcgcacagca
aaccaagccttggctcagaatgctaatggagaggagcaatacggagatccaaacagcttc
cctggtccagctgcactacctcctcctcgaccaggtgtcccaatagtccggccattgcca
ccacctcctaatctcgccttgaacctccctcgtcctcccccgtctgttcagtaccctggt
ccgcccaggccattaggtgttccaatgatgcaacccatgcatccacaacaccagctctcg
atgcctgggccacctggacaccagcagatgatgatgaaccggcctccaccaatgcagcat
ggcatgcctgtgccacctccaccgggatcacagtttgctcatcatcaagttccaagacct
tatggtcagcttccaccacctatgcatgggatgatgcaaccaccacctatgcatgggatg
ccgcctcctccaccacatgaggaggcaccaccgcctcttcctgaggagccagagcctaag
agacaaaaattcgacgagtcagctctcgttccagaagaacagttccttgctcagcatccg
ggtgctgctacaatcagggtctctgttccaaacgtggatgatgggcaagtcattgagatc
acagtgcagtcattatcagaaaacgtgggaagtttgaaagagaagatagccggtgaaaca
caaatcccagcaaacaaacagaagttgagtggaaaagctgggttcttaaaggacaacatg
tcgcttgcacattacaatgtcggagcaggtgaaatcttaacactgtctttgagagagcgt
ggtgggagaaagagatag

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