KEGG   Raphanus sativus (radish): 108808237
Entry
108808237         CDS       T06014                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
  KO
K10752  histone-binding protein RBBP4
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03082  ATP-dependent chromatin remodeling
rsz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108808237
   03083 Polycomb repressive complex
    108808237
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rsz03036]
    108808237
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     108808237
  Histone modification proteins
   HAT complexes
    HATB complex
     108808237
   HDAC complexes
    Sin3A-HDAC complex
     108808237
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     108808237
    PRC2.2
     108808237
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     108808237
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108808237
  Chromatin remodeling factors
   NuRD complex
    108808237
   NuRF complex
    108808237
   NuRF complex (fruit fly)
    108808237
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 CAF1C_H4-bd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I WD_LRWD1 Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR19_1st MIOS_WD40 WD40_RFWD3 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_RIG_1st Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_Vps41 DUF6922
Other DBs
NCBI-GeneID: 108808237
NCBI-ProteinID: XP_056843122
UniProt: A0A9W3BV14
LinkDB
Position
6:26742013..26761140
AA seq 421 aa
MADGDEGKEEQGMDQVEEDFSIWKKNTPFLYDDLMISNPLEWPSLTVHWVPSTLTPYAAD
PYFNVHKLILGTHTSDGAQDFLMIADAVIPTPNAEPGLGGTNQYPIVPKVEIRQKIRVDG
EVNRARCMPQRPTLVGAKTSGCEVFLFDYMKHASKHQTSDCDPDLRLLGHDKEGYGLSWS
PFKEGYLLSGSHDQKICLWDVSASPQDKKLNAMFVYEGHECAVEDVSWHMKNENLFGSAG
DDGRLVIWDTRTNKMQHHVKVHEKEVNYLSFNPFNEWVLATASSDSTVALFDLRKLNVPL
HTLDSQNEEVFQVEWDPYHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLF
SHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAESIYRDEDEADNDEDIKQDTTQQ
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggcagatggagatgaaggtaaggaggagcagggaatggatcaggttgaggaggatttc
tctatatggaagaagaacacaccattcctctacgacgatctcatgatctctaaccctctc
gaatggccgtctctcaccgtccattgggtcccatctacgctgactccttacgctgcggac
ccatacttcaacgtacacaagctcatactcggaacccacacttccgatggtgcccaagac
ttcctcatgatcgccgacgccgttatccccacacccaacgccgaacctggcttaggcggc
acaaatcaatatcccatagtccctaaggtggagattaggcagaagatacgtgtcgatgga
gaagtgaatagagcgcggtgtatgccacaaaggccgacgcttgtgggtgcaaagacgagt
gggtgtgaggtgtttttgtttgattacatgaaacatgcttcgaagcaccaaacaagtgat
tgtgatcctgatctgaggcttttgggacatgacaaggaaggatatgggctgtcttggagt
cctttcaaggaaggttatctcctgagtggttcacatgatcagaagatttgcctttgggat
gtttctgcttcaccgcaagataagaaattgaatgcaatgtttgtgtatgagggacatgaa
tgtgctgttgaagatgtttcatggcatatgaagaatgagaacctttttgggtctgcgggt
gatgatggtagattggtgatatgggacacacggacaaacaaaatgcaacaccatgtgaaa
gttcacgagaaagaggtgaactatctgtctttcaatccgttcaacgaatgggttttagcc
acagcttcctcagactcaactgttgccttgtttgacctccggaagctgaatgtacctttg
cacaccctggattcacaaaatgaagaggttttccaagtggagtgggatccttaccatgaa
acagtgcttgcatcttctggtgaagacagaaggctgatggtctgggacctgaacagggtt
ggagaagaacagcttgagatagagttggatgcagaagatggtccaccagagttgctcttc
tctcacggaggccacaaggctaagatctcagattttgcttggaacaaaaacgagccttgg
gtcattgcaagcgtagcagaagacaacagtcttcaagtctggcaaatggcagaaagcatc
tatcgagacgaagatgaggctgacaatgatgaggacatcaaacaagatactacacagcag
tcatga

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