Raphanus sativus (radish): 108808330
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Entry
108808330 CDS
T06014
Name
(RefSeq) protein RDM16
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108808330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108808330
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108808330
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
108808330
NCBI-ProteinID:
XP_018435998
UniProt:
A0A6J0JK39
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Position
1:11949927..11953330
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AA seq
770 aa
AA seq
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MDKEKRHSRSSNRDDRDRDRDRDSSADRSPERDGGRRHRDGDSKRRDSDHHRSSRRDDRE
DERERARERRRSVERGEREGSRDRHEGSKDKETRSKRKEREEENGSKEGKKRSRFSDGGG
ERRNDKVSEGSRAMNAPSDVSTGVTSQSSIASGTSLAPSQTLLTKVTISPTDENKGVSIV
GSHEVHGKSSTDGTTSGQTSSNLSLDALAKAKKAIQLGKGLADRLKKLSSVNQGAKLTSE
GSPHAKVPSLTATTPAVSAGTSSASALPHAVLPGLENEANIEAVKRAQDIAARMGYRQDP
EFPTIINYLLGQTPADTMAVQQKPAKPPVLRVDALGREIDEHGNVISVTKPSNLSTLKVN
INKQKKDAFQILKPQLEVNPEENPHFDPRMGIDKNKILRPKRMSFQFVEEGKWTRDAESL
KLKSQFGEAKARELRVKQAHLAKARDDINPNLIEVSERAPRKEKPKELIPDVEWWDAAVL
TNGVYGDIADGTITDGDLKTEKLTHYIEHPRPIEPPAEAAPPPPQPLKLTKREQKKLRTQ
RRLAKEKEKQEMIRQGLLEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRTAAAEREQAH
TDRNAARKLTPAEKREKKERKLFDDPTTIETIVSVYKINKLSHPKTRFKVEMNARENRLT
GCSVMTDEMSVVVVEGKSKAIKRYGKLMLRRINWQEAVKKDEKEGEEEDDDEEENGGNNK
CWLVWQGSVAKPSFYKFLVQECLTESAAKKVFADAGVGHYWDLAVNYTDD
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggataaggagaagagacactccaggagcagcaacagggacgatcgcgatcgcgatcgt
gatcgagattcgagcgcggatcgttcgccggaacgcgacggcggacgccggcatcgcgat
ggagactcgaagcgtcgcgattcagatcaccaccggtcatcgaggcgcgacgatagggaa
gacgagagagagagagctcgggagaggaggagatctgtggagcgaggcgagagggaaggg
agtagagataggcacgaagggagtaaagataaggagacgaggagcaagaggaaagagagg
gaggaagagaatgggagtaaggaagggaagaagagatctaggttttctgatggtggtggt
gagaggagaaatgataaagtgagtgagggttctagggctatgaacgcacctagtgacgtc
tccactggcgtcacttcacaaagttctattgcttcgggaacgtctttggcccctagtcaa
accctgctcactaaggtaacgatatctccaacggatgaaaataagggagttagtattgtc
gggtctcatgaggttcatggaaaatctagtacagatggaacaacatccgggcaaactagt
tcaaacttgtctcttgatgcattagctaaagctaagaaagctattcagcttggaaagggt
ttagccgacaggttgaagaaactttcttcggtgaatcaaggtgctaagctgacttcagaa
ggtagcccacatgctaaagtgccatcattgactgccactactcctgctgtctctgcggga
acatcttctgcttcagcactaccacatgctgtcttacctggccttgagaatgaggccaac
attgaagctgttaagagagctcaggatatcgctgctaggatgggataccgtcaggatcct
gagtttcctaccattatcaattaccttctaggacagacacctgcagatacgatggctgtt
caacagaaacccgcgaagcctcctgttctgcgtgtggatgcacttggaagggagatagat
gaacatggaaatgtgattagtgtgactaagcctagcaatcttagtacattaaaggttaac
atcaacaagcagaagaaagatgcttttcagattcttaaacctcaactggaagtgaatcca
gaagaaaacccccatttcgatccgaggatgggtattgataaaaacaagattttgagaccc
aagcgtatgagttttcagtttgttgaggaaggtaaatggacaagagatgctgagagtttg
aagttgaagagtcaatttggtgaagcaaaagcaagagagctgagggtgaagcaagcgcat
ctggctaaggccagggatgatataaatccaaatttgatcgaggtatcagaacgtgccccg
agaaaagagaagcccaaggagctaatcccagatgttgagtggtgggatgcagctgtcctc
acaaatggcgtgtatggcgacatagctgatggtaccattaccgatggcgatctgaagaca
gaaaaacttacacattacatagagcatccccgtcccatagagccacctgcagaggcagcg
cctccaccgccccagcctcttaaactgacaaagagggaacagaagaaacttcgaacccag
aggcgtctggcaaaagaaaaggagaaacaggagatgatcagacaaggtttgcttgaacca
ccaaaaccaaaggtgaaaatgagcaatctgatgaaggttctcgggtctgaagcaacgcaa
gacccaaccaagcttgagaaggagatccgcacagcagctgcggaacgtgaacaggctcac
acggacaggaacgcagcacggaagctaacacctgcagagaagcgtgagaagaaagagagg
aagcttttcgatgatccaacaacgatcgagacaatagtgtcggtgtacaagatcaacaag
ctctctcatccaaagacgagattcaaggtggagatgaacgctagggagaacagattaacc
gggtgtagcgtgatgacagatgaaatgagcgtggtggtggtggagggtaagagcaaggca
ataaagagatacgggaagctgatgttgaggaggataaactggcaagaggcggtgaagaaa
gatgagaaggaaggagaggaagaagatgacgacgaagaagagaatggtggaaacaacaag
tgctggttggtttggcaaggaagcgttgcgaaacctagtttctataagtttcttgtacaa
gagtgcttaacggaatctgctgccaagaaagttttcgctgatgcgggtgtcggtcactac
tgggacctcgctgtcaattacacagacgactaa
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