Raphanus sativus (radish): 108808596
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Entry
108808596 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108808596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108808596
03012 Translation factors [BR:
rsz03012
]
108808596
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108808596
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108808596
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108808596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
AAA_19
AAA_16
nSTAND3
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
108808596
NCBI-ProteinID:
XP_018436222
UniProt:
A0A6J0JKR9
LinkDB
All DBs
Position
1:complement(21747947..21753815)
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AA seq
1189 aa
AA seq
DB search
MPYYSAIFRGHIKPNAVVGAASMFIKHNTIQLFRSPNLLFTPSSLVRSLHSQRLRVLSAK
AARRNASSSSSSSASLEWRVSNLPYFQKQGYGRIAYNDYESSDEPDRDIGGSSQSQQMAG
STLDNVDQWRFKLTMLLRNREDQEVVSRERKDRRDFDHISAMATRMGLYSRQYSKIIVIS
KSPLPNYRPDLDDRRPQREVVLPFGLQSEVDAHLHTFLDQKKMLIPEMPRPNSSGSLATE
HGNYETPETVMQNSLARERILRPRSLQLRSKQQQWMDSPEGQKMVEFRKTLPAYKEKEAL
LRAISANQVIVVSGETGCGKTTQLPQYILESEIEATRGAACSIICTQPRRISAISVSERV
AAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLIDRSLKGVTHVVVDEIHER
GMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPVRAHFLE
DFLETTGYKLTPYNQIDDYGEEKTWKMQKQAQFKKRKSQISSAVEDALEAADFKGYQFRT
RDSLSCWSPDSMGFNLIENVLCHIVKGERPGAVLVFMTGWEDIHSLKNQLQAHTLLGDPN
KVLLLACHGSMASSEQRLIFDRPPEGVRKIVLATNMAETSITINDVVFVVDCGKAKETSY
DALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFADYQLPELLRTPLQ
SLCLQIKSLGLGSISEFLSRALQPPEALSVQNAVEYLKLIGALDDNENLTALGKKLSMLP
VEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLMPSDKKDLAESARSKFSGRDCSDHL
TLIRAYSGWKDAERTRSGNEYCWQNFLSAQTLKAMDSMRKQFFFLLKEASLIDNVEGCSK
LSYDDHLVRAIICAGLFPGVCSVVNKEKSITFKTMEDGQVLLYQSSVNGNVQRIPFPWLV
FNEKIKVNSVFLKDSTAVSDSVLLLFGDRVSSGGFDGHLKMLGGYLEFFMKPSLAYTYIS
LKRELDELIQNKLVNPKLDIQLYDKLMTAIRLLVSEDQCEGKFVFGRKALSPTTTKMLKV
VGTPVPNSGGENDKNMLQTFLARGGHGTPVYKTRQLKNNQFRAMVTFNGLDFMGQPCGTK
KSAEKDAAREALLWLQGESKSSLNDLNHMSTLLKKDKSKKSARAPARWN
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgccttactactctgcaattttccgaggacatatcaaacctaacgccgtcgtcggtgct
gcctccatgttcatcaaacacaataccatccagctcttccgaagccctaacttactcttc
acaccatcgtctctagttaggtctcttcattctcagaggttaagggtcttgtccgcgaaa
gcagctcgtcgcaatgcttcttcttcttcttcttcttctgcttcgttagagtggagagta
tctaacttaccctactttcaaaagcaaggctatggaagaatcgcgtacaacgactacgaa
tcgagcgatgagcctgaccgtgacatcggtggctcttctcagtctcagcaaatggcgggt
tcgacacttgataacgttgaccaatggaggttcaaacttactatgcttctacggaacaga
gaagaccaggaagttgtgtccagggagaggaaagatcggcgtgattttgatcatatctct
gcaatggctactcgaatgggattatacagccgtcagtattcgaagatcattgtcattagc
aaatctcccttgcccaactatagacctgatcttgatgataggcgccctcagagagaggtg
gttttaccttttggcctacaaagtgaggtagatgcccatctacatactttccttgaccag
aagaaaatgttaataccggagatgcccaggccaaatagtagtggaagtttagcaaccgag
catgggaactatgagacaccagagacggtgatgcagaatagtcttgccagggaaagaata
ctccgtcccaggagtttgcaactgaggagcaagcaacagcagtggatggattctccagaa
ggccagaaaatggtagagttccgcaaaacgcttcctgcatacaaagagaaagaagcacta
ttgagagctatttcagcaaaccaggtcatagtggtttctggagaaactggttgtggtaaa
acaacacagcttccccagtacatattagagtctgagattgaggctacccgtggagctgca
tgcagcatcatatgtacacagcctagaagaatatctgctatttctgtttctgaacgagtt
gctgcagaacgtggagaacaaataggagaatccgttggctacaaagtgaggcttgaagga
atgagggggagagacacacgtcttctcttttgtacaacaggtgttttacttagaaggcta
cttatagatcgtagcctgaaaggtgtgactcatgtcgtagttgatgaaattcatgaacgt
gggatgaatgaagatttcctgcttattgtcttgaaagatctccttcctcgtcgacctgac
ctaaagttgattttgatgagtgctactctgaacgctgagctcttttcttcttattttggt
ggtgcaccagccatgcacatcccaggttttacataccctgtccgagcccatttcttggag
gattttcttgagactactgggtacaagttgacaccatataatcaaattgatgattatggc
gaggaaaagacatggaagatgcaaaaacaagctcaattcaaaaaaaggaaatcccagata
tcctctgccgttgaggatgctcttgaagctgcagacttcaaaggataccagtttcgtact
agagattctttgtcatgttggagccctgattcgatgggcttcaacctcatcgagaatgtt
ctttgtcacatcgtcaaaggagagagacctggtgcggttttggtatttatgactggttgg
gaagatattcactccttgaagaatcaactccaggctcatactcttctaggagaccccaac
aaagttttgctgcttgcctgtcacggttccatggccagctctgagcagagactgattttt
gatagacctccagaaggagttaggaaaatagtgctggccaccaatatggctgagacaagt
attaccatcaatgatgttgtatttgtggttgattgtggaaaagcaaaagagacgtcttat
gatgcgcttaacaatactccttgtctgcttccatcttggatctcgaaggcagctgctcgc
caaagaagaggaagagcaggccgtgttatgcctggagaatgttatcacctttatcctaga
tgcgtctatgatgcttttgctgattaccagctgccagaactcctgaggactccgttacag
tctctatgtctacaaatcaaaagcttaggacttggaagcatttcagagttcctttctagg
gcattgcaacctcctgaagctttatcagtccagaatgctgttgagtatctaaagcttatt
ggtgctcttgatgacaacgaaaatttaacagctttagggaaaaaattgtctatgcttcct
gtggagcctaaacttggaaagatgcttattttaggggctatcttcaactgtctagatcca
atactgacagttgttgctggtcttagtgtgagagacccattcctgatgccatctgacaaa
aaggatctagcagagtcggctaggtccaagttctctggccgtgattgtagtgatcatttg
acattgattcgagcatacagtggttggaaagatgctgaaagaacacgttctggtaacgag
tattgctggcagaactttctctctgcgcaaactctcaaggcaatggactctatgcggaaa
caattcttctttctcctcaaggaggcttctcttattgataacgttgaaggttgcagtaaa
ctgagttacgatgatcatcttgtccgcgccatcatctgtgctggcctgttcccgggagtt
tgttctgttgttaataaggaaaagtcaattacgttcaagacaatggaggatgggcaagtg
cttctataccaaagttctgtgaatggcaatgtacaaaggattcctttcccttggctagtc
ttcaacgaaaaaatcaaagtcaattctgtgtttcttaaagactccactgctgtttctgac
tcggtgcttcttctgtttggagatagagtatcttccggtggatttgatggtcatctcaaa
atgctgggaggctatctagagtttttcatgaaaccctctttagcatatacatacatatcg
ttaaaaagagagctcgatgaacttattcagaataagcttgtgaatccaaaacttgatatt
caactatacgacaaacttatgactgccattagattacttgtgtctgaggaccagtgtgag
ggcaaattcgtcttcggccggaaagctctgagccccacaacgacaaagatgttaaaagta
gtagggactccggtgcccaacagcggcggggaaaacgacaagaacatgcttcagacattt
cttgcccgaggaggacacggaacaccagtgtacaagacgagacagctgaagaacaaccag
tttcgggcaatggtcactttcaatgggttggatttcatggggcaaccatgtggtacgaag
aaaagcgcagagaaggatgcagctcgtgaggctttgctgtggttacaaggcgagtccaag
tcgagtttgaatgatcttaaccacatgtcgacgctcttaaagaaggacaagagtaaaaaa
tccgcaagggcaccagctagatggaattaa
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