Raphanus sativus (radish): 108809060
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Entry
108809060 CDS
T06014
Name
(RefSeq) histone deacetylase complex subunit SAP18
KO
K14324
histone deacetylase complex subunit SAP18
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108809060
03015 mRNA surveillance pathway
108809060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108809060
03036 Chromosome and associated proteins [BR:
rsz03036
]
108809060
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108809060
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108809060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAP18
AAA_lid_14
Motif
Other DBs
NCBI-GeneID:
108809060
NCBI-ProteinID:
XP_018436687
UniProt:
A0A6J0JM02
LinkDB
All DBs
Position
6:complement(52689434..52691072)
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AA seq
153 aa
AA seq
DB search
MAETARRQGGGGRLFPPPPPRGVNQPPRPKAEPVDREKTCPLLLRVFTKSGGHHTKEDYA
VRGKEPKDEVQIYTWKDANLRELTDLVKEVSVAARRRDARLSFAFVYPDKNGRFIVRQVG
QTMSYPNRKQPDDSKTLADLHFEIGDYLDVAIY
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaacagcgagaagacaaggtggtggtgggaggctgtttccgccgcctcctccg
agaggcgttaatcaaccccctcgccctaaagccgagcctgtcgatcgcgagaagacgtgt
cctttgcttcttcgtgtgttcaccaagagtggtggtcatcatactaaggaagattatgct
gtgagaggcaaagagccaaaggacgaagttcagatttacacttggaaagatgccaatctt
cgcgagctaacggatttggtcaaagaggtttctgtggcagctaggagaagagatgctaga
ttatcgtttgcgtttgtttatccagacaagaatggccgctttattgtcagacaggttggt
cagacgatgtcttatccaaaccgaaaacaaccagacgacagtaaaacactcgctgacctt
catttcgagattggagattatctggatgtggcaatctactag
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