Raphanus sativus (radish): 108809081
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Entry
108809081 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108809081 isoform X1
KO
K06100
symplekin
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108809081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108809081
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108809081
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108809081
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108809081
U7-dependent histone pre-mRNA processing factors
108809081
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
AAA_lid_9
Motif
Other DBs
NCBI-GeneID:
108809081
NCBI-ProteinID:
XP_018436709
UniProt:
A0A6J0JPK3
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All DBs
Position
1:11767388..11778765
Genome browser
AA seq
1318 aa
AA seq
DB search
MATAAAGTAKAQALSLLAAANNHGDLAVKLSSLRQVKELLLSLEPSLSAEIFPYLVELHV
SPETLVRKSLIEIIEEVGLRMLDHSDVLVTFLLVLAKDEDPVVAKKAVSVGTAFYCSILE
EMAMQFHHRGKVDRWVGELWTWMVKFKDAVFSTALEPGSVGVKVLATKFMETFILLFTPD
ASDPEKIFNEGSRQMFNISWLAGGHPILNSAMLMSEANKTFGILLDLIQSAGRLPGALTI
TVVSCLAVIARKRPVHYNTVLSVLLDFHPNLETVKGRHAASVQYSIRTALLGFLRCTSSP
MIESRDKLLRALRAMNAADVADQVLRQVDKLIRNSERAARENWSGKNNQAVNHQNSWDLS
KKRIMPQGEDDTVNGEVAPKRLRHNNNLLLTPQSQISDSPHGTVSINGISSGNHLSDSEP
TPVEQMVSMIGALLAEGDRGAASLEILISKLHPDMLADIVITSMKHLPNSPPTLTTSLGT
PADIVVSSSINPMRSPTGQPQLPFDSTLPVGSSLSDVPSLNAVVDPRRDPRRDPRRMDPR
RSTPSVGPTSLPVGEGKETVPVQMDISTLASKPPSVPDVTAGTSGSVHPTTVEHSQNKVM
GSSVIRRIDQPDCREDLLPMPKEYGYLSKSKSSLDVPLSPCRDDEGIRKTKFDLDLVSVP
DFNQHSASEAEPDFDLHPPVDSNITAAEESYRELAPVPSYVELTTEQSKTVGKFALERII
ESNRHVCGGFDCNKIRMALIARLIAQIDAGNDVATILREHISEDHREFKGHELVLHVLYH
LHSMANLDTDESSSYATVYENFLIVVARSFLETLPPFDKSFSKLFGEAPHLPDSAIKLLD
ELCSTRPGPIGEAYDSERVTQGLGVVWSLILVRPNERKACLAIALNCSVHHEEDIRAKAI
RLVTNKLCHLAYTSEHVEQFATDRLLTAVNSETDFSHTAEVTKIESKSQKTSTSDSPWSG
NSEIHSQQDLQTSRDASVLSFSEAQRLISLFFALCKKKPSLLRLVFDVYGKAPKTVIQAF
HRHMPILIRELGSSYIELLPIISDPPKGSENLLTLVLQILTQELAPSSDLIATVKHLYET
KLKDVSILIPLLSSLTKDEVLPIFPPLLNLPLDKFQLALAHILQGSAHTGPALTPAEVLI
AIHDVVPDKDGPTLKKITDACSACFEQRTVFTQQVLAKALGQMVDRTPLPLLFMRTVIQA
IDAFPTLVDFVMGILSKLVSKQIWRLPKLWPGFLKCVSQTQPHSFPVLLELPMPQLESIM
KKFPDLRPSLTAYANQPTIRASLPNSALSVLGLDSGQVSGSQMHPSDAASSAHGTALT
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccgccgccgggacagccaaggcgcaggctctctctctcctcgccgctgca
aacaaccacggcgatctggcggtgaagctctcgtctctgaggcaggtgaaggagttattg
ctgtcgctggagccgtctctctccgctgagattttcccctatctcgtggaactccacgtg
tcccctgaaactctagttcgcaaatcccttatcgagatcattgaagaggttgggttgagg
atgctggatcattctgatgttctagtgactttcttacttgtcttagccaaggacgaggat
ccggttgttgctaagaaagctgtttctgttggaaccgctttttattgcagtatcttggag
gagatggcaatgcagtttcatcatcgtggtaaagttgatcgttgggttggggaactatgg
acatggatggttaagttcaaagacgctgtcttttctactgctttggagcctggttctgta
ggcgtgaaagttttggcgacaaagttcatggagacatttattttgctttttacgcctgat
gcatctgatcctgagaaaattttcaacgaaggaagtagacagatgtttaacatttcgtgg
cttgctggcggtcaccccattttaaattcagcaatgctcatgtctgaagcaaataagaca
tttggcattttgctagatctcatacagtcggctggtcgtttaccgggtgcactgacgata
actgttgttagttgtcttgcggtgatagcaaggaagaggcctgtccactacaacactgta
ctttcagttctgctggattttcacccaaatcttgagacggtaaaggggcgccatgctgca
agcgttcagtattccataagaactgccttactgggattccttagatgtacttcctcacct
atgatagagtcaagagataagcttcttagagcattacgagcaatgaatgctgcagacgtt
gctgatcaagttctccgccaagttgataaattgatcagaaatagtgagcgcgctgcacgt
gagaattggtcaggcaagaacaaccaggcggttaatcatcagaattcttgggatttgtca
aagaaacgaataatgccccagggtgaagatgatacagtcaatggagaggttgctccgaag
cgcttacgccataataataacttgcttttgactccgcaaagtcaaataagtgattctcca
catggaacagtctctatcaatgggatatcctctggtaaccatctttcggacagtgagccg
actccagtggaacaaatggtttcaatgattggtgctttgcttgctgaaggagacagagga
gctgcatcacttgaaattctcatttctaagcttcatccagatatgcttgctgatattgtt
attacaagcatgaaacatttgcctaatagccctcctacattaacaacttcactgggtact
ccagcagatattgtcgtttcttcgtccataaatcccatgcgttctccgactggtcagcca
caacttcctttcgattcaacccttcctgttgggtcatcattatccgatgtgcctagcttg
aacgcggttgtcgaccctaggcgcgacccaagaagggaccctcgtcgcatggatccaaga
cgttcaactccatctgtgggaccaacatcactgcctgtaggtgagggtaaagaaacagtc
ccagttcagatggacatctcgaccttagcgagcaagccaccttcggttcctgatgtcaca
gcagggactagtggttcagtacatccaacaacagtagagcatagccaaaacaaggtgatg
ggaagttcggtaatcagaagaatcgaccagcctgattgcagagaggacttgttgcctatg
cccaaggagtatggatacctctcgaagagcaaatcatctttagatgttccactatctcct
tgcagggatgacgaaggcatcagaaaaacaaagtttgatttggatctagtgtctgttcca
gattttaatcaacactcggcttcagaagcagagccagattttgatctacacccccctgta
gactcaaatattactgcagcagaggaaagctaccgagagttggcacctgttccatcatat
gttgaacttaccacagagcaaagcaaaactgtaggaaagttcgctttagaaaggataatt
gaatctaatagacatgtatgtggtgggtttgattgtaacaagatacgcatggcattgatt
gcccgattgattgctcagattgatgctggcaatgatgttgcaaccatactaagagagcat
attagtgaggatcatcgagaattcaaggggcacgaacttgttttacatgttctgtaccac
ctgcattcgatggcgaatctggacactgatgaatcctcttcctatgctactgtttatgaa
aattttctcatagtagtggcaagatcatttctggaaactcttcctcctttcgacaagtct
tttagcaaactttttggagaagctccacatctacctgattctgccataaagctactggat
gaactctgctccactcgtcctggcccaattggagaagcctatgatagtgaacgtgttacc
caagggcttggtgtagtttggagcttaattctagtgcgtccaaatgagcgaaaagcatgc
ttagctatagcattaaattgttcagttcatcatgaagaagacatccgtgcaaaagccatc
cgacttgtcacaaacaaactatgtcaccttgcatacacatcagagcatgttgagcaattt
gcaacagataggttgctgactgctgtgaactctgagacagatttctcacacactgcagaa
gtaacaaaaatagagtctaaaagtcagaaaacttcgacaagtgactctccatggtctgga
aactccgaaattcactctcagcaagatctacaaacttctcgtgatgcttctgttttatca
ttttctgaagctcagagattaatttctctgttcttcgctttatgtaaaaagaaacctagt
ctccttcgtcttgtctttgatgtttacgggaaagctccaaaaacagtaatccaggctttt
catcgacatatgcctatcctgatacgagaattaggttcatcttatattgaattgctccct
ataatatctgatcctcctaagggaagtgaaaatttattgacattggtgttgcaaatattg
acacaagaattggcaccttcgtcggatttgattgctactgtaaagcatctatatgaaacg
aagctaaaggatgtttcgattcttattcctttgctttcttcactcactaaagacgaggtt
ttgcctatctttccaccgcttcttaatcttccacttgataagttccaacttgcacttgct
catatattacagggttctgctcacactggccctgccctaacacctgccgaggtactgata
gctattcacgatgttgttcctgataaagatgggccaacactgaaaaagataacagatgca
tgttcagcttgctttgaacaacgcacagttttcacgcagcaagtcttagcaaaagccctc
ggtcagatggttgatcgaacacctcttcctttactcttcatgagaacagttattcaggca
atcgatgcttttccaacactggttgactttgtcatgggaatcctttcaaagttggtgagt
aagcagatatggagactaccaaaactgtggcctggcttcttgaaatgtgtgtctcagaca
cagccacattctttccctgtcttgttggagttaccaatgccgcaacttgaaagtatcatg
aagaagtttcctgatctaagaccttctcttactgcttatgcgaatcagccaaccatcaga
gcttctctaccaaattcagctctttcagttcttgggcttgacagtgggcaagtttcgggg
tcacaaatgcacccttcagatgcagcttcttctgctcacgggacagccttaacgtga
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