Raphanus sativus (radish): 108809309
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Entry
108809309 CDS
T06014
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108809309
09123 Folding, sorting and degradation
03018 RNA degradation
108809309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108809309
03041 Spliceosome [BR:
rsz03041
]
108809309
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108809309
mRNA degradation factors
5'-3' decay
Lsm complex
108809309
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108809309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
108809309
NCBI-ProteinID:
XP_018436959
UniProt:
A0A6J0JQA0
LinkDB
All DBs
Position
Unknown
AA seq
138 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGREGPKGGMGRGIDDGAARGRGR
GGSVGKMGGNKVGGRGRG
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcgctgctcaagactgctcaaggtcatcccatgcttgtagagctgaag
aatggggagacgtataatgggcacttggtgaattgtgatacatggatgaacattcatctc
cgtgaagtcatctgtacttcaaaggatggagacaggttttggcgaatgcctgaatgctat
atccgtggcaacaccatcaagtacctccgtgttccagatgaggtgattgataaagtacag
gaagagaagacccgcacagatagaaaaccaccaggggttggacgaggaagaggaagagaa
ggtccaaagggaggcatgggacgtggtattgacgatggagctgccagaggccgaggccgt
ggtggctcagttggaaagatgggtggaaacaaagttggaggtcgaggccgtggttga
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