KEGG   Raphanus sativus (radish): 108809309
Entry
108809309         CDS       T06014                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03018  RNA degradation
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108809309
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108809309
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108809309
   03041 Spliceosome [BR:rsz03041]
    108809309
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108809309
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108809309
Spliceosome [BR:rsz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108809309
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 108809309
NCBI-ProteinID: XP_018436959
UniProt: A0A6J0JQA0
LinkDB
Position
Unknown
AA seq 138 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGREGPKGGMGRGIDDGAARGRGR
GGSVGKMGGNKVGGRGRG
NT seq 417 nt   +upstreamnt  +downstreamnt
atgcttcctctttcgctgctcaagactgctcaaggtcatcccatgcttgtagagctgaag
aatggggagacgtataatgggcacttggtgaattgtgatacatggatgaacattcatctc
cgtgaagtcatctgtacttcaaaggatggagacaggttttggcgaatgcctgaatgctat
atccgtggcaacaccatcaagtacctccgtgttccagatgaggtgattgataaagtacag
gaagagaagacccgcacagatagaaaaccaccaggggttggacgaggaagaggaagagaa
ggtccaaagggaggcatgggacgtggtattgacgatggagctgccagaggccgaggccgt
ggtggctcagttggaaagatgggtggaaacaaagttggaggtcgaggccgtggttga

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