Raphanus sativus (radish): 108809502
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Entry
108809502 CDS
T06014
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1
KO
K13103
tuftelin-interacting protein 11
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108809502
Spliceosome [BR:
rsz03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108809502
Other components
Complex C specific factors
108809502
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Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
108809502
NCBI-ProteinID:
XP_018437146
UniProt:
A0A6J0JQ06
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Position
1:7645233..7647961
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AA seq
840 aa
AA seq
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MDEDQEMERFSMDKDYEGGRWENGEFVYEKRKEKRKQTKHDAIYGVFAESDSGESSGGGG
GGQRKRRKDRGASGREADLTKPVDFVSTGNFTPNQEVVRDSRDSEDDAIDDEDSEVRGGL
GTGRSGLGLGFNQFDVDDEDNLLPGAFGKKIAEGAKMREKARMEKKRGQEGGAKGGKKDV
LGGGDIGQFEKATKGIGMKLLAKMGYKGGGLGKNQQGIVAPIEAQLRPKNSGLGFDGFKE
AKFPDLKKVEEKKTAVSASVSGNDQGYAGRNLWKKKKKVRKEVYVTAEELLEKKHEEGFG
GGQTIIDMRGPQVRVVTNLENLDAEEKARDADVPMPELQHNLRLIVDLVEHEIQKIDRDL
RNERESALSLQQEKEMLIKEEERQKTHLDNMEYISDEISRIELDNTSGSLTLDSLASRFE
DLQTSYPDDYKLCNLSTIACSLALPLFIRMFQGWDPLRDAVHGLKAMSSWRKLLEVEDNQ
NIWVMPTPYSQLVSEVVLPAVRIAGINTWEPRDPEPMLRFLETWDNLLPSSVLHTILDTV
VLPKLSTAVEYWDPRRELVAIHVWVHPWLPILGQKLEFLYQIIQMKLSNVLDAWHPSDPS
AYTILSPWKTVFDATSWEQLMRRYIVPKLQLALQEFQINPANQDIDRFNWVMKWASAVPI
HLMADLMERFFFPKWLDVLYHWLRSKPRFEEIHEWYYGWKGLFPQELSANERIRIQLKRG
LDMLMEAIEGVEVSQPRAKAQEQKHFEPPRAQAKPQMDNSEVLSLKEVLEVFAQEKELLF
KPKPNRMYNGLQIYGFGNVSVVIDSVNQKLLAQKDGGWFLVTPDDLLRMHHNNATVSGKR
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggatcaagagatggagagattcagcatggacaaggactacgaaggaggaaga
tgggagaacggcgagttcgtatacgagaagaggaaggagaagcggaagcaaaccaaacac
gacgctatctacggagtcttcgccgagagcgattcgggtgaatctagcggcggaggagga
ggaggtcagaggaagagacgcaaggatcggggcgcctcgggaagggaggccgacttaacc
aagcctgtcgattttgtgtccacaggtaattttacgccgaatcaagaggttgttagggat
tctagagatagtgaggatgatgcgattgatgatgaggatagtgaagttagaggtggattg
ggtactggaaggtcaggtttagggttagggtttaatcagtttgatgttgatgatgaggat
aatctgttaccgggtgcttttgggaagaagatagctgagggagcgaagatgagagagaag
gcgaggatggagaagaagagaggccaagagggtggtgcaaagggagggaagaaggatgtt
ttaggtggtggtgatataggtcagtttgagaaggctactaaagggattggtatgaagctg
cttgcgaagatggggtacaagggaggtgggcttgggaagaaccagcaaggtattgttgct
cccattgaagcacagttgaggccgaagaattcgggtctgggtttcgatggtttcaaggag
gcaaagtttcctgatttaaagaaggttgaggagaagaagactgctgtttcggccagtgtt
agtgggaatgatcagggttatgcagggaggaatctttggaagaagaagaagaaggtgagg
aaggaggtttatgttactgcagaggagttgttggagaagaagcacgaagagggttttggt
ggtgggcagaccattatcgatatgcgaggaccacaggttcgggttgtgacaaatttagaa
aatttagatgcagaagagaaggcaagagacgcagatgttccaatgccggagctgcaacac
aacttgcgactgattgttgatctagtcgaacatgaaattcagaagatcgatagagacttg
aggaacgagagggaatctgctttaagcttgcagcaggagaaggagatgcttataaaggag
gaagagaggcaaaaaacacacctagacaacatggaatatatctcagatgaaataagtcgg
atcgagctggataatacgtctgggagtttgacacttgattcgcttgctagtcgtttcgag
gatctgcagacaagctatcctgatgattataagctttgtaacctgtccaccattgcttgt
tcgctggccttgcctctctttatcagaatgtttcagggctgggaccctctaagggacgca
gtgcatggtctgaaggctatgtcttcttggagaaagcttttggaagtggaggataatcaa
aatatctgggtaatgcccacgccttatagccaactagtctcggaggtggtgttacctgca
gtgcgtattgcaggcatcaatacctgggaacctagagaccctgagcccatgcttagattt
ttagagacgtgggacaatttgctaccttcatctgtcttgcatactattctggacaccgta
gtactgccaaaactgtcaactgcagttgaatattgggatccacgaagggaacttgtagct
atccatgtttgggtgcatccttggttgccaatacttggtcagaaattggagtttctgtat
cagatcattcagatgaaattgagcaatgtccttgatgcttggcatcctagtgatccatcc
gcctacactattctttctccatggaagacggtttttgatgctacaagctgggaacaactt
atgcgacgttacatagttcccaaacttcaactggccttgcaagagtttcagataaacccg
gcaaaccaggatatagaccggttcaattgggttatgaagtgggcatctgcagtgccgata
cacctaatggctgatttgatggagaggttcttcttccccaaatggctggatgtgttgtac
cattggttacgttctaaaccgaggttcgaagagatccacgaatggtattatggctggaaa
gggttattcccgcaggagctttcagcaaacgagaggatccggatccagttgaagcgtggt
ttagatatgttgatggaagctatcgaaggagttgaagtgtctcaaccaagggcaaaggca
caagagcagaaacactttgagccgcctcgggctcaggccaagcctcagatggataacagt
gaggtgctgagtttgaaagaagtgttggaagtatttgcacaggagaaggagttgctgttc
aaacccaaaccgaataggatgtacaatggtcttcagatatatgggtttgggaatgtgagt
gtggttatagactcagtgaaccagaagctgttggctcagaaagatggaggctggtttctt
gtaactcctgatgacttattgaggatgcaccacaacaatgcaactgtttctggtaaacgg
tag
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