Raphanus sativus (radish): 108810264
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Entry
108810264 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108810264
KO
K24155
rabconnectin-3a
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108810264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108810264
Membrane trafficking [BR:
rsz04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
108810264
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
108810264
RAVE complex
108810264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
108810264
NCBI-ProteinID:
XP_018437889
UniProt:
A0A6J0JT15
LinkDB
All DBs
Position
6:complement(53009250..53019432)
Genome browser
AA seq
2445 aa
AA seq
DB search
MPETSQEDPISLTDPIDQLPLRLLRSEIVPPAPSRSQSSIDWLPDFAGYSWLAYGASSLL
VISHLPSPLRGDEDSANGPIFRQILEVSGDVSSPVTAVSWSPVTPSVGELAVGSGNYVCL
FARDLSDLNGSFCWSQSAVLVQETKVEAIEWTGSGDGMIVGGTGIVLWKRRNQSWEIAWK
FPGVYHQDLVSSTWSIEGPLASATSWSKFPSECDEGGRGVLAYYSDGEIYRKVELPHPQR
ISMIQWRPVAAEKSVEHAGKSVRNVLMTCCLDGALRLWCEVDGGKTKKGMKDVKGHKKSF
CVAAVIEMNQVLDGCLGRDLFVFWGTRSGGILKTIEGSNQLFSTEKYEHENIGNCEWLVG
QGPGKSASLWAVHCLDDISPMRFPRITLWARQETNETGLEPLSIADARASSDRLPLKKVS
VLRNNLYGTPVICSSIYLSSCNTIYWSSLHTVKSHASEDSPPNKSSVLQCITEKVLDLDG
HGGKIVQVAFTPIISEAGYTASLDYNGLIIIWSSCDHLNRAIDHPISVSSWKPCGRLQNQ
ELRLKYTSICWAPSSLNDESFLLAGHVEGIDCYSVRNGGRGYGGFLTHYICTIPFAVSQP
FENGPTSIFARPLSDSCGKTFKSNSFLLLSVWMKDKRFDALSWKVTLHHFDSAGSTCDCH
FHEFDSTESGKWLFEDTFAGNKNCIAVRSCSSELPESHRYDEVTSFAVVNPSGRALENDM
SIESQAYTMATGHTNGSLKLWRSSLQESSTPSIMWELVGMLTIGQSPVSAISLTESGHKI
AALCTENHLKAVRTISVWEIVHLLDSGVFILEDKLHVDTEVVAVRWSTVGNDQLMLGVCT
QKEMRIYGIARQPCRSTSFAVSDYSSEAQIWQCFAVTRTFSAIHDLWWGSKAMNALAHND
YVSLHGQWLAVIDKKQKTDNNPEIFAANLPNLVNITEGRDSELLSNSIPLTATAYGSDTI
KDTTSMLHIVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSGDASVKDQGA
KSDLCPDIFLSKYYEGSVSSGPNLKDFHWGGSMLQNSQFQAGLKSNFSMDSYSPNGSHSS
PATDLEFTGFCEQLEKLSDEGKISRTEKIQYFAIVDLLREISNPHSTSVYASLDEAGRRF
WITLRFKQLYFARSFGKQASIEELDIDSSMIGWAFHSESQENLSGSLLPTESSWQQMRAL
GFGFWYSDVAQLRPRMEKLARQQYLKNKKPKDCALLYIALNRIQVLAGLFKISKDEKDKP
LVAFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNLQDEQL
ALVICRLVDGQGGALESNLINKYILPSAVRRGDFWLASLLKWELGEYHQSILAMAGSLEN
PVTGSSTVTSNHISFVDPSIGLYCLMLTTKNSLKNAVGERSASNLSRWATLMAATAFSRC
GLPLEALECLSASASGHGGTHQASGLSNGHLHTPRDVLELSDPDLSNWVSSGVSSTVDTR
FKLSLAVQSLSKLLREATALIRNSEIVPCEKLSGFQHKLQTSLELLYQRFSLSSSFLRTT
MIMSAYNRGLLPSMGYNIFQENSSSGRSLDKPHTNEDLLQDSALCKLILKATEENSFILS
RIIAACSVTCFHSVPCFEENKVPSGPEPKLSNALRFYFQGILQSFSSFETTIRLCLNSSL
ENLKTRVAIVLDLVEYCSRLAMAWILGDVNCLFRMVQPLTISYFHGDMPYEVDLETLKRV
YHQDVSVSVPDASDAGLYSVVGNNEVGYPVNSIPEDERRLVTQACFWKHVSDFVKHKMTS
NSIVQDDGISNSSSSEKFDAQTSLDSSGAIVCVTEKIMSVLGKTLVSTIAQLSSYHVKQL
VFFLKQKLEKRIQIPTLLWLHGCRESQANFTNRAIPDSSIENEDNSDLAVSVRFWKICVD
PHLVLEAFLLENFDISEWSKLKPLGDWSDMYREVTGKNELNVPCNQDGLSSNEVASLAHH
ASNSSQKAATASENSAFQDPKEIHKRTGELIQALCINAINHRQAALASNRKGIIFFNQED
GGPCYDQSNYIWSDADWPHNGWANSESTPVPTRVSLGVGLGDKKGAHLGLGGATVGDFSL
SKPGKSHRVPAYTGLGVSGLGWETHEDFEQLIDPPPIVETVIASAFSSHPTMPLFLVGSS
NTHIYLWEFGKDRATATYGVLPAANVPPPYALASISAVQFGPCGHRFASAALDGTVCTWQ
SEVGGRSNVYPVDSSICFNGFASDVEYISSSGSIVAASGCSSSGANVVVWDTLAPPSTSQ
ASISCHEGGSRSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRYIATGKMKKQRNVDGD
QNKNGMLWYIPKAHLGSVTKISTIPRTSLFLTGSKDGDVKLWDAKAAKLIYHWPKLHERH
TFLQPNSRGYGGIIRAGVTDIQVCPNGFITCGGDGTVKFVSLKDS
NT seq
7338 nt
NT seq
+upstream
nt +downstream
nt
atgccggagacgagtcaggaggacccgatctcactcacggatccgatcgatcagttacct
ctccgcctattaagatcggagatcgtcccaccggctccgtctcgatcccagtcttccatc
gactggctccccgacttcgccggttactcatggctcgcttacggagcttcctctctcctc
gtcatctctcaccttccttcccctctccgcggcgacgaagactccgcaaacggaccgatt
ttccgtcagattctcgaggtttccggcgacgtctcgtctccggtcaccgccgtttcctgg
tctcctgtaacgccgtctgtaggcgagctcgcggttgggtctgggaactatgtttgcctc
ttcgcgcgtgatcttagcgatctgaatggttctttttgttggagtcagagtgctgtattg
gtgcaagaaacaaaagttgaagcgattgagtggacaggatccggggatgggatgatagtt
ggtggaactggcattgtattgtggaagagaaggaaccaatcctgggaaatagcttggaag
ttcccaggggtttaccatcaagatttggtttcctccacctggtcaatcgagggtcctttg
gcgtcagcaacttcttggagcaagtttccatcggagtgtgatgagggaggtagaggtgtc
ttggcctattacagtgacggggagatatatcgtaaagttgaattgcctcatcctcagaga
atatccatgattcagtggaggccggtggctgcagagaagtctgtagaacacgcagggaaa
tcagtgaggaatgtgctgatgacatgttgtttggatggggctctaaggttgtggtgtgag
gtagatggtggaaagactaaaaaaggcatgaaagatgtaaaggggcataaaaagtcgttt
tgtgtggcagctgtgatagagatgaatcaggtcttggatggctgtttgggaagagatttg
tttgttttttggggaactcgctcagggggtatattgaaaaccattgagggtagtaatcaa
ttgttttctactgaaaagtatgaacatgagaatattggcaactgtgaatggttagtaggg
caaggacctgggaaatcggcttctttgtgggctgtccattgtcttgatgatatctctcct
atgaggtttccgaggattacattgtgggcgagacaagaaacaaatgaaaccggtctggaa
ccactctccatagctgatgctagagcttcttctgatcgattgccccttaagaaagtttct
gtattgagaaataacctttatggcacgccagttatctgctcttcaatttatttatcttcg
tgcaataccatatattggtcttccttgcacacagtaaaatcacatgcctcagaagattca
cctccaaataaatccagtgtattgcagtgcatcacagaaaaagtattagatcttgatggt
catggtgggaaaattgtacaggttgcctttactcctatcataagtgaggcgggatacact
gcttctctggattacaatggtttgataataatctggtcctcttgtgatcatttgaaccgt
gctattgaccatcctatatctgtttcctcttggaaaccttgtggacggcttcaaaatcaa
gagttaagattgaagtacacgagtatatgctgggcaccttcatcattgaatgatgagagc
tttctacttgcgggacatgttgaaggcattgattgctatagtgtgaggaatggcgggagg
ggttatggtggtttccttacccattacatatgtaccataccgtttgcagttagccagcct
tttgagaatggcccgaccagcatatttgcaagacctctgtcagattcttgtggaaagaca
ttcaaaagtaacagttttttgcttctaagtgtatggatgaaagataaacggtttgatgct
ctgtcatggaaagtgaccctgcatcatttcgactcagcagggagcacctgcgactgtcat
tttcatgaatttgatagcacggaatcgggcaagtggttgttcgaagatacttttgctggt
aataaaaattgcattgctgttagatcatgctcttcagaattacctgaatctcatcgttat
gatgaagttactagttttgctgtggtcaatccaagcggcagggctctagagaatgacatg
agcattgaaagtcaagcttatactatggcaactggtcatactaatggctctttaaaactg
tggagaagtagtcttcaggaaagttcaacaccttccattatgtgggagcttgttggcatg
cttaccattggccaaagtcctgtcagtgctatatctctaactgagtcgggacacaagata
gcagcactctgtacagagaatcatttaaaagctgttcgaacaattagcgtatgggaaatt
gtacaccttttagattcaggagttttcatactagaggataagttacatgttgatacagag
gttgttgctgtaagatggtcaactgtgggtaatgatcagctaatgcttggagtttgcaca
cagaaggagatgcggatatatggtattgctcggcaaccctgcagaagtactagtttcgct
gtctctgattattcttcagaggcacaaatttggcaatgcttcgctgttactcgtacattt
tctgctattcatgatttatggtggggatccaaagccatgaatgcccttgctcataatgat
tatgttagcctacatggtcaatggctggccgttattgacaagaagcaaaagactgataac
aatccagaaatttttgcagccaatcttccgaacctagtgaatattacagagggcagagac
tctgaattgttatctaatagtatccctttaactgcgaccgcatatggttcagatactatt
aaggacactacgagcatgttgcatattgtggaaaagttaggaggcgctttgccactctat
catccacatgccctccttgtagctatacgttcaggcaactggaaacgagcaagcgcagct
ttaaggcatcttgctgagtatattacttcaggtgatgcctccgtcaaggatcaaggtgca
aagtcagatctttgtccggatatctttttgtcaaaatattatgaagggtctgtctccagt
ggcccaaatcttaaggatttccattggggtggttcaatgctacagaattctcagtttcaa
gcagggttgaagtcaaatttcagtatggattcttatagtcccaatggtagtcacagttct
cctgcaacagacttagaatttactggtttctgcgagcagctggagaagttatcagatgaa
ggaaaaatttccaggacagaaaagatacaatattttgcaattgttgatcttcttcgtgaa
attagtaatccacattcgacttctgtctatgcaagtcttgatgaagctgggagaagattt
tggatcacacttaggtttaagcagctgtacttcgctcgaagttttggcaaacaagcatct
attgaagagttggatattgactctagtatgataggatgggcttttcactcagagtctcaa
gaaaatctgtctggttctcttttacccactgaatcatcatggcaacaaatgcgagcactg
ggttttggattttggtattcagatgtagcacagttgcgcccacgaatggagaaactggcc
cgacagcaatacctgaagaacaagaaacctaaagattgtgcgcttctctatatagcttta
aatagaattcaagttttggctggtctttttaaaataagcaaggatgagaaagataaaccc
ttggtggcttttctttcacgcaattttcaggaagagaaaaataaggcagcagccttgaaa
aatgcatatgtgctaatgggtaaacaccaactggagctggctataggtttctttctcctt
ggaggtgaagcttcatcggcgataaatgtctgtgtgaaaaatcttcaagatgagcagctt
gcgcttgtaatttgccggcttgttgatgggcagggtggagccctggaaagtaatcttata
aataaatacatactcccatctgctgttcggagaggagacttttggctggccagccttctt
aagtgggaattaggagagtatcatcagtcaattcttgctatggctggaagtctagagaac
cctgttaccggaagctccactgttacttcaaatcacatctcttttgtggatcctagtatt
ggattatactgtctcatgttgactacaaaaaatagtctgaagaatgcagtgggggaaaga
agtgcttcaaatcttagtagatgggcaaccttgatggctgctaccgccttcagcagatgt
gggctcccgctcgaggcgttagaatgtctttcagcatctgccagcggtcatggtggtacg
catcaggctagcggtctaagtaatggacatttgcatactccacgtgatgttcttgagctt
tctgatcctgatttatctaattgggtatcaagcggtgtttcatctactgtggacactcgt
tttaaattgagtctagccgtccagtccctctcaaagctattacgggaagcaactgcactc
ataaggaattctgaaattgttccgtgtgagaaactctctggatttcaacataagctacaa
acatctttggagctattataccagaggttttcgttatcttcatctttcctacgtactacg
atgattatgtcagcatacaaccgtgggttactaccatccatgggatacaatatatttcag
gaaaatagttcctcaggacgctcactagataagcctcacacaaatgaagatctcctccag
gattcagctttgtgtaaattaattctaaaagcgaccgaagagaactcgtttatattgtca
cgtatcattgctgcatgcagtgtcacttgctttcactcagtgccatgctttgaggaaaac
aaggtgccatctggacctgagccaaagttgtccaatgccttacgattttactttcaggga
attctgcaatccttctctagttttgaaaccactataaggctgtgcttgaactcctctttg
gaaaatctgaaaacaagagtcgccattgttcttgatttagtcgaatattgctcaagactc
gcaatggcttggatcttgggagatgtaaattgtctctttcgaatggtgcagcccttgacg
atatcatattttcatggagatatgccttatgaggtggacctggaaaccctgaagagagtg
taccaccaagacgtttctgttagtgttccagatgcgtcagatgcaggactttattctgtt
gttgggaacaacgaagttggatacccagtgaactcaattccagaagatgaaaggcgtctt
gtaacacaagcatgtttctggaagcatgtttcagactttgtgaaacataagatgacatca
aattcgattgttcaagatgatggtatctcgaatagtagttcctcagagaaatttgatgct
cagacatcgttggattccagtggtgcaattgtctgtgtaactgagaagatcatgtccgtt
ctgggaaaaacactggttagcaccatagctcaactgtcttcctaccatgtaaaacaactt
gtattcttcttgaaacagaaattagagaagagaattcagattcctaccttgttatggttg
cacggatgtcgggaatctcaggcaaattttactaatcgagctatcccagattcaagtata
gagaatgaagacaacagcgaccttgcagtttctgtgaggttttggaagatttgcgttgat
cctcatttagtactcgaagctttcttgctagaaaattttgacatctctgaatggtcaaaa
cttaaaccattgggagattggagcgatatgtacagagaagtaacagggaagaatgagctc
aatgtgccatgcaatcaagatggtctgagtagtaatgaggtggcttcacttgcacaccac
gcttctaattcttcgcagaaagctgcaactgccagtgaaaattctgctttccaggacccc
aaagaaatccataagaggaccggggagcttatacaggccctttgtatcaatgccatcaac
catcggcaagctgcactagctagcaaccgcaagggtataattttctttaaccaagaagat
ggtggtccctgctatgatcagtcaaactatatttggtcagatgcggattggccacataat
ggttgggctaactctgagtcaactcctgttccaacacgtgtctcactgggtgttggtctt
ggggataagaaaggagcacaccttgggttaggtggggccactgttggtgatttttctctt
tccaagccggggaaatctcacagggttccggcttacactgggttaggagtctctggtcta
ggttgggaaactcatgaagattttgagcagcttattgatcctcccccaatagttgaaact
gttattgcaagcgcattctctagtcatccaacaatgcctctctttttggttggctcaagc
aacactcacatttacttgtgggagtttggaaaagacagagctactgcaacttacggtgtg
ctgcctgctgcaaatgttcctcctccatatgctctggcgtcaatatcagcagtgcagttc
ggtccatgcggacacagatttgctagcgctgcactggatggaacggtatgcacttggcaa
tcagaagttggtggaagaagcaatgtctatcctgttgactcatctatttgcttcaatggc
tttgcatcagatgtggaatatataagttcgagtggatctatagttgcagcatcaggatgt
agctcaagtggtgccaacgtcgttgtatgggatactctagctcccccttcaacctctcag
gcatccatcagctgtcatgaaggtggttcacgctctatctcggtgtttgataatgacatt
ggtagtggctcgatttctccaatgattgtcactggtggcaaaaacggtgatgttggattg
catgatttccggtatatagcaacgggtaagatgaagaagcagaggaacgttgatggagat
cagaacaagaatgggatgctttggtacataccaaaggctcacttagggagtgtgaccaag
atatcgacaataccacggacaagtctgttcttgacgggaagcaaagacggagatgtcaaa
ctctgggatgcaaaagcagcaaagttgatttatcactggcctaaactacacgaaagacac
acttttcttcagccaaactctagaggttacggtggtatcatccgagctggggtgacagac
atacaagtttgtccgaatggattcattacttgtggtggtgatggcactgtgaagttcgtc
agcctcaaagattcctaa
DBGET
integrated database retrieval system
