KEGG   Raphanus sativus (radish): 108810866
Entry
108810866         CDS       T06014                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
rsz  Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rsz03009]
    108810866
Ribosome biogenesis [BR:rsz03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    108810866
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_EML WDR55 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_IFT140_1st WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_LRRK2 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_IP5PC_F Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_NWD2_C Beta-prop_DCAF12 VPS8_N Beta-prop_Nup120_160 PEP5_VPS11_N WDR54 Ge1_WD40 IcmF_C PROPPIN PALB2_WD40
Other DBs
NCBI-GeneID: 108810866
NCBI-ProteinID: XP_018438442
UniProt: A0A6J0JRW8
LinkDB
Position
6:complement(40179893..40181956)
AA seq 443 aa
MEITVIASSSMDGGIGRWDLKTGNEQLRFKQCASPAHGLTAVGEKFIAASQLHSASGSSG
SIFFWSWNKPQVEVKSFPVESITALVANSEGTYIVGGGASGDIFLWEVATGKLLKKWHAH
YTSVTCLVFSGDGSFLVSGSQDGSLRVWSLIRLFDDQQRHQQQERTLYEHKFDEHTMTVT
DIVIDYGACNALLVSASRDNTCKVWSLSQGKLLRSIIFPSEINALALDPGGSVFYAGAED
SNIYIGALNSSSDYYATEALGSVSDTRKPITCLAYCTDGNLLISGSEDGVICVWDTRSNK
PVRTFTFGHGKGPVNNIQVVRKTIVGNSNKSQSSWRRNVVSSLPPPPLEKYERKGDDAMD
GIVIVDPPPFANDVPVYSSYHSAGLIQEQVREIQQQGSAATEIEMESLKLEYKKSIQMND
QWQKNYEDLLQVVMEVELNGGSN
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggagataactgttatagcttcgtcgtcaatggacggaggaatcggaagatgggatctg
aaaaccgggaacgagcagcttcggttcaagcagtgcgcctctcccgcccacggcctcacc
gccgtcggagagaaattcatcgccgcctctcagctccatagcgcatccggttcatctggc
tccattttcttctggtcctggaacaagcctcaagtggaagttaagagcttccccgtggag
tcaataacggctcttgtagcaaacagtgaaggcacttatatagttgggggtggagcctct
ggtgatatctttctttgggaggttgcgactgggaagctgctaaagaagtggcatgctcat
tacacttcagtaacgtgcttggtgttctctggagacggttcttttttggtttcagggtct
caagatgggtcccttagagtctggtctcttataaggctatttgatgatcaacaaaggcat
caacagcaagagagaactctctatgaacacaaatttgatgagcatacgatgactgttacc
gatattgttatagactatggtgcctgcaatgctttgttagtttctgcttccagagataat
acatgcaaggtttggagcctgtcacaggggaaattgttgaggagtataatctttccttca
gaaatcaatgcgcttgcattggaccctggcggctctgtgttctatgctggtgccgaagat
agcaatatctatatcggtgccttaaattcctcaagtgactattatgcgacagaagctctt
ggttcagtatccgacacaaggaaacccattacttgcttagcttattgcacagacggaaac
cttttgatttctggatcagaagatggtgttatttgtgtttgggataccagatcaaataaa
cctgttcgtactttcactttcggccatggaaaaggacctgtgaacaatattcaagttgtc
agaaaaacgattgttggtaattccaacaaatcacaatcttcctggagaagaaatgttgtt
tcttcgttacctcctcctcctctggaaaaatacgaaagaaaaggagatgatgccatggat
ggtatagtcatcgttgatccgcctccgtttgctaatgatgttcctgtttactcttcttac
cacagtgctggccttattcaagagcaagttagagagattcagcaacaaggctccgcagca
acggagatcgaaatggaaagtttgaaacttgagtacaaaaaatctatacagatgaatgat
caatggcagaagaactatgaggatttgctccaggtggttatggaagtagagctaaacggt
ggttccaattga

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