Raphanus sativus (radish): 108811555
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Entry
108811555 CDS
T06014
Name
(RefSeq) paired amphipathic helix protein Sin3-like 1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
108811555
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108811555
REST complex
108811555
Heterochromatin formation proteins
Other heterochromatin formation proteins
108811555
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
108811555
NCBI-ProteinID:
XP_018439114
UniProt:
A0A6J0JWL4
LinkDB
All DBs
Position
6:3603336..3610431
Genome browser
AA seq
1363 aa
AA seq
DB search
MKRMRDGSGSQFRRTLGSSRGQLYGQSPFPGSGDTDEARGEGARVASSGDAASQKLTTND
ALSYLKDVKDMFHDQRETYDRFLEVMKDFKAQRTDTRGVIARVKELFKGHNNLIYGFNTF
LPKGYEITFIEEDEPPPPKKTVEFEEAISFVNKIKTRFKHDEHVYKSFLGILNMYRKEKK
EISEVYNEVSILFEGHSDLLEEFTRFLPASLPSHSAAQFCRSQAQRYNDRGSGSPLIRQT
HVEKERRRDRTVTSRSDYSADRNDLCDDKTMVKMQREQRKRADKENRERRGRVLDDREAD
QDSLHHFPEKRKSSRRAEGPEAHSGSASHSEKDNLKSMYNEAFVFCEKVKERLCSQDDYQ
SFLKFLNLFSNGIVQRKELPNLVSDLIGKFPDLMDEFSQFFERCESIDGFQHLAGVMSKK
SFGSEEQASRSMEVEEKEREHKPDLEVVNETEQCKEEYVGKSIQELDLSNCECCTPSYRL
LPPDYPVRTASQRSELGAEVLNDRWVSVTSGSEDYSFKHMRRNPYEEILFRCEDDRFELD
MLLESVSSAVRSAESLLNIITEKKITFSGSFRIEDHFSALNLRCIERLYGEHGLDVIDIL
HKNPGTALPVILTRLKQKQDEWKKCRDDFDKIWAKVYAKNQCKSLEHRSFYFKQQDSKNS
SAKSLVAEIKELKEKTQNEDDILLSISAGYKQPINPNLDYEYFSLAIHEDLYKLVHFSCE
ELCSTKEQLRKVLRLWENFLEPMLGVPPRAKGTDPVEDIPKSPDVDHSTSTNEKADGSCG
ADTATLHSRKLISVANGDQNASSAAPNPGVIGLLNKDSTGKDDFQDADTANRDGVTCSAV
KLQKEHETGNRADQRSEMPIPMDISERASTSSLSAPSGENNHRVVEKEDLAGSHEIQAKP
SNTSGDVHHGVYSIETSPSTQAGDVGKLITLASGIRSDSSTDNMNSDEPEGPVTVEKEEG
ELSPNGDFEDNVGLHEDPGVKSTSKPDNLADAEVENEDDDSENGSEGGEECSDDENREEE
SGEHDEVDGKAESEGEAEEVDSHLLAGDTELVRQSERVLLSARPLLKHVAAVLSDGRTKD
IRVFYGNDNFYVLFRLHQILYERILSAKRNCSGDELRSENAKDTDSLDPYSRFMKGLYGL
LDGSVENTKFEDECRAILGNQSYVLFTLNKVIYKLVKQLQAVVADEMDTKLIQLYEYEKS
RKPGRVIDSVYYENARVLLHDENIYRLECSSTPSRLSIQLMDSVVEKPEPYAVSMDPMFA
SYLQTEFLSTSTGKKDEGHNIVLRRNQRPFSGLDDLAALCKAMEGVQVVNGLECKMSCSS
YKVSYVLDTEDFFHRKKKKKKTEHLPLQRNKDRVERFHRFLSA
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgagagacggctccggctctcaatttcgacgcactttgggctcttctcga
ggccaattatatggacaatctccgttccctggcagtggtgacactgatgaagcaagagga
gagggagcgagagtcgctagtagtggggacgctgcctctcagaaattaacaaccaatgat
gccttgtcctacctcaaggatgttaaggacatgtttcatgatcaacgcgagacttatgac
aggtttcttgaggttatgaaagattttaaagctcaaaggaccgacacacgcggtgtgatt
gcccgagttaaggaactgttcaagggacataacaatttgatttacggatttaataccttc
ttgccaaagggatatgaaataacctttattgaggaagacgaacccccgcctcctaagaag
actgttgaatttgaagaagctattagttttgtcaataaaattaagactcgattcaagcac
gatgaacacgtctataagtctttcttgggtatcttgaatatgtaccgaaaggagaagaag
gaaattagtgaggtttacaatgaggtatctatcctttttgagggtcactcggatttgctt
gaagagtttactaggttcttgcctgcgtctttgccgtctcattcagcagcgcagttttgc
cggagtcaggcccaacgctacaatgaccgaggatcaggctctcccctaattcgtcaaacg
catgtggagaaggaacgccgacgagataggactgttacttcacgcagtgactatagtgct
gatcgtaatgacctttgtgatgataaaacgatggtcaagatgcaaagagagcagcggaag
cgtgctgataaggagaacagagaaaggagaggccgtgttctagacgacagagaagcagat
caagatagcttgcaccattttccagagaaaagaaagtcttctagaagagcggaaggtcct
gaagcacattctggttctgcttcgcattctgagaaagacaatttgaaaagcatgtacaac
gaagcatttgttttctgtgagaaagtcaaggagagattatgcagccaagatgattatcag
tcattcttgaagttcctcaatctatttagcaatggaatagtccaaaggaaggaactgccg
aatttggtttctgatcttattgggaaattccctgatcttatggatgagttcagtcagttc
tttgagcgttgtgagagtattgatggatttcaacaccttgctggtgttatgagcaaaaaa
tcatttggtagcgaagaacaggcatccaggtcaatggaggtggaagaaaaagaaagagaa
cataagcctgacctcgaggttgttaatgaaacagagcaatgcaaggaggagtacgtggga
aaatctattcaagagcttgatctatctaattgcgagtgttgcactcctagctaccggcta
ctgcctccggattatccagtacgaactgccagtcagaggtcggagctaggagctgaggtt
ttaaatgatcgctgggtgtctgtcacttcaggaagtgaagattattcttttaagcacatg
cgcagaaacccatatgaagagatcttgttcagatgcgaagatgatagatttgagttggac
atgcttttggaatctgtgagctctgcggtcagaagtgctgaaagtttgttgaacatcatc
acagagaagaaaataactttttctggctccttcaggatcgaagatcacttttcggccctg
aacttaaggtgtattgagcgactttatggcgagcatggtcttgacgtgatagacatatta
cataagaatccaggcactgcacttcctgtaatcttaactcgtttgaagcagaaacaagat
gaatggaagaaatgccgtgatgattttgataagatctgggcaaaggtatatgcgaaaaac
caatgcaaatcacttgagcatcgcagtttctacttcaagcaacaagattcaaagaactcg
agtgcaaaatcattggtggctgaaattaaggagctaaaagagaagactcaaaatgaggat
gatattctgctgtctatttctgctggttacaagcaacccataaatcctaatcttgactat
gagtatttcagcctagctattcatgaagacctgtacaaactagtccatttttcatgtgag
gagttatgctctacaaaagaacagctcagaaaagttctgaggctttgggaaaatttcctt
gagccaatgctgggcgttcctcccagggccaagggcacagatcctgtcgaggatattccc
aagagtcccgatgtggatcacagcacttcgactaatgagaaggctgatgggagttgtgga
gcagacacagcaacgctacattctaggaaactaatatctgttgccaacggagatcagaat
gcttcttctgcggcacccaatcctggtgtgattggtttgttaaataaggattcgacaggg
aaagacgattttcaagatgctgatacagctaacagagatggtgttacctgttctgctgta
aaactccaaaaagaacatgagactggaaatagagctgatcaaagatctgaaatgccgatc
ccaatggatatcagcgaaagagcatccacctcgagtttatcagccccaagtggagaaaac
aatcatcgtgtagtagaaaaggaagatctggcaggctcacatgagattcaagccaaacca
agcaacacttcgggtgatgttcatcatggtgtatatagcattgaaacttctccttcgacc
caggcaggtgatgttggcaaattaattactttggcaagcggaataagatcagattcttct
acggataatatgaattctgatgaacccgaaggtccggtcacagttgagaaggaggaaggt
gaactatcacctaatggtgatttcgaagacaacgttggtcttcatgaagatcctggggtg
aagtccacttctaaaccagacaatttagcagatgctgaagtagagaatgaggatgatgat
agtgaaaatggttcagagggtggtgaagaatgttcagatgatgagaatagagaggaggaa
tctggtgagcatgatgaggttgatggtaaagctgagagtgagggggaagcagaggaagtg
gactcacatctcttagcaggagacactgagctggttaggcagtccgaacgtgttctcttg
tctgccagacctcttttaaagcatgtagcagcggttctaagcgacgggaggactaaagat
atccgagttttctatgggaatgacaacttttatgttctctttaggcttcaccaaattctt
tatgagcggattttgtctgcaaaaaggaattgctcaggcgatgaactgagatcggaaaac
gcaaaggataccgattccctagatccttattcgaggtttatgaagggtttgtatggtttg
cttgatggatcagttgaaaatacaaagtttgaggatgagtgcagagctattctcggaaat
caatcatatgtgttgttcacgctgaacaaagtgatatacaaattggttaaacagcttcaa
gctgttgtagctgacgagatggacaccaagctaattcagttgtacgagtatgagaaatcc
cggaaacctggaagggttattgactcggtgtattatgaaaatgcgagggtcctccttcac
gacgaaaacatataccgcttggaatgttcatccacgccatctcgtctatcgatccaactt
atggacagcgtagtcgagaagccagaaccatatgcagtttctatggatcccatgtttgca
agctatttgcaaactgaatttctttccacctcaacaggaaaaaaagatgagggacataac
attgtgttacgaaggaaccagcgtccattctccggcttggatgatcttgcagcactctgt
aaagccatggaaggtgtccaagtagtaaatggcttggagtgcaagatgtcttgctcttct
tacaaggtttcttacgtcttggacaccgaggatttcttccacaggaagaagaagaaaaag
aagaccgaacacttaccgctgcagcgtaacaaagatagagtagaaaggttccataggttt
ctctcagcttga
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