Raphanus sativus (radish): 108811728
Help
Entry
108811728 CDS
T06014
Name
(RefSeq) chaperonin 60 subunit beta 1, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108811728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108811728
03110 Chaperones and folding catalysts [BR:
rsz03110
]
108811728
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108811728
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108811728
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108811728
Messenger RNA biogenesis [BR:
rsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108811728
Chaperones and folding catalysts [BR:
rsz03110
]
Heat shock proteins
HSP60 / Chaperonin
108811728
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108811728
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108811728
Exosomal proteins of other body fluids (saliva and urine)
108811728
Exosomal proteins of breast cancer cells
108811728
Exosomal proteins of colorectal cancer cells
108811728
Exosomal proteins of bladder cancer cells
108811728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
108811728
NCBI-ProteinID:
XP_018439316
UniProt:
A0A6J0JW63
LinkDB
All DBs
Position
6:36162175..36165679
Genome browser
AA seq
592 aa
AA seq
DB search
MASTFTATSSIGSMVAPNGQKLSSSSFGRRQNVCPRLRRSTPAIVCAAKELHFNKDGATI
RKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKL
VRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVAELKK
MSKEVEDSELADVAAVSAGNNEEIGSMIAEAMSRVGRKGVVTLEEGRSAENALYVVEGMQ
FDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDI
EQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGK
EVLGNAAKVVLTKETSTIVGDGTTQDAVQKRVTQIKNLIEQAEQDYEKEKLNERIAKLSG
GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALE
NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKYGYNAATGKYEDLMAA
GIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYGY
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgactttcactgcaacgtcttccattggttcaatggttgctccaaatggccaa
aagctgtcttcaagctcgttcggaaggaggcagaacgtgtgccccaggctaagaagatcc
actcctgctattgtatgtgcagccaaggagttgcatttcaacaaagacggggctactatt
aggaaacttcaagctggtgtcaacaagcttgcagacctagttggtgttacacttggacct
aaagggcgaaatgttgttcttgagagcaagtatggatcaccaagaattgtcaatgatggt
gtcactgttgccagggaggttgagttggaagatccggttgagaacattggtgctaagctt
gtcaggcaagctgctgccaagaccaatgacctcgctggtgatggtaccacaacatctgtt
gttcttgcacaaggttttattgctgagggtgtcaaggtggtggctgctggtgcaaaccct
gtattgatcactagaggcattgagaagacagcaaaggctttggttgccgagctcaagaaa
atgtctaaggaggttgaagacagtgaacttgcagatgtggcagctgttagtgcaggtaac
aacgaagagattggaagtatgattgctgaagcaatgagcagagtgggcaggaagggtgtg
gtgacacttgaggagggtagaagtgccgagaacgcactctacgttgtggaaggaatgcaa
tttgaccgtggttacatctccccttactttgtgacagacagtgagaaaatgtcagttgag
ttcgacaattgcaagttgcttctcgttgacaagaaaattaccaatgcaagggatcttgtt
ggtgttctggaggatgcgattagaggaggatacccaattttaattattgcagaagacatt
gagcaggaggctttggcgacccttgttgttaacaagcttagaggcacactgaagattgca
gctctcaaagctccaggttttggagagcgcaagagccagtaccttgatgatattgccatt
ctcactggagcaactgtgatccgtgaggaagttggtctttcacttgacaaagctggaaag
gaggttcttggtaatgcggcaaaggtcgtccttacgaaggagacctcgaccattgtaggt
gatgggacaacacaagacgcagtgcaaaagcgtgttacacagattaagaatcttattgag
caagcagagcaagattatgagaaggaaaaactgaatgagagaattgcaaagctctctggt
ggagttgctgtgattcaggtgggagcacaaacagaaacagaactcaaagagaagaaactg
agagttgaagatgctcttaatgctacaaaggctgctgttgaagaaggtattgttgttggt
ggtggttgtactctgcttcggcttgcttccaaggttgatgccattaaagccgcccttgaa
aatgatgaagaaaaggttggtgcggatatcgtgaaaagagcactgagttaccctctgaaa
ctgattgccaagaatgctggagttaatggaagcgtagttagcgagaaggtgctttctaac
gataacgtgaaatacggctacaatgctgctaccggcaagtacgaggatttaatggctgca
ggaatcattgatccaacaaaggttgtgagatgttgcttggaacatgcagcttctgttgca
aagacattcttgatgtcagactgtgtcgtcgttgagatcaaggagcctgagccagttccc
gtaggcaacccaatggacaactcaggatatggatactga
DBGET
integrated database retrieval system
