Raphanus sativus (radish): 108811835
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Entry
108811835 CDS
T06014
Name
(RefSeq) transcription initiation factor TFIID subunit 1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108811835
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rsz01001
]
108811835
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108811835
03036 Chromosome and associated proteins [BR:
rsz03036
]
108811835
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
108811835
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
108811835
Protein kinases [BR:
rsz01001
]
Serine/threonine kinases: Other
TAF1 family
108811835
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108811835
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
108811835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
ubiquitin
TBP-binding
Rad60-SLD
Ubiquitin_5
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
108811835
NCBI-ProteinID:
XP_018439440
UniProt:
A0A6J0JUP4
LinkDB
All DBs
Position
6:complement(6522356..6530449)
Genome browser
AA seq
1759 aa
AA seq
DB search
MAEHKEEDDEEYGDRSRGLEFIFGNVDHSGDLDADYLNEDAKEHLSALASSLPDIMLMAS
SDYKTSDPAEQDYYKEKATDAVDYGDIDEEYDGPEVQVVTEEDHLLPKREYFSSAAASGS
LYSKASVFDDDDYDEEEEQEVENIPFEESFDSEDSESVVLKEDKGLEYEEEANILGNEER
MDTNEKSATSLSTLYVEDGMVVLQFSEIFAIHKPPQKRTKRENRYITYRDRYKSMELVED
DEELLLKSHGRIDTRLKQAADLIQLDVPLPTRGDLQLAKAGTFGSIIPESREFTKLGRDS
YTMSELLKQELEDDRSSLCQPQSSMEVFPLDQYEWENRIIWESSPGVSGNSFESVESEIE
SEGLLIQGSNSETEQESLNVVNSIEQAQAENNKPVSFYVSPLEPLGSHTTSESTNKSRRH
PQLLRLESQWDEDHPSENDDAGGKSSKQLKSDALGRFSRLRLQERDMGDDAWLDSIIWES
DKEVSRSKLIFDLQDEQMVFEIPDNRESKDLQLHAGSMILSRSSKPKDERFQEGCGSNYG
CQFNISNDKFYMNGKSCQQLQANANQFGVHSLRVLHSASAIKLQTMKNKLSNKDIANFHR
PKALWYPHDNELAIKQQEKLPTQGSMQIVVKSLGGKGSKIHVGIEESVSYLKAKASRKLD
FKETEAVKIFYMGKELEDEKSLAEQNVHPNSLVHILRTKVHLLPWAQKLPGEHKSLRPPG
AFKKKSDLSTKDGHVFLMEYCEERPLMLSNAGMGANLCTYYQKSFPEDQHGNLLRDKNGT
LGNVMNLEPGEKSPFLGEIQGGCSQSSIETNMYKAPIFPHKLQSTDYLLVRSPKGKLCLR
RIDKICAVGQQEPRMEVMSPASKNLQTFLVNKMLVYVDREFKHRHRIPADEVSFLFSNLS
DAVVKKNMRIHGIVLERDKNGQIFWYNKHRFDKFPHEIELKNLVAPEDVCSYESMLAGLY
RLKHLGISQFTLPASISTALAQLPDEAISLAAASHIERELQITPWNLSSNFVACTTQDRA
NIERLEITGVGDPSGRGLGFSYVRAAPKVPAAAGRMKKKEAACCGAPTVTGTDADLRRLS
REAAREVLLKFNVPDEKMAKQNRWHLIAMIRKLSSEQAASGLLKVDPTTIGKYARGQRMS
FLQLQPQAREKCQEIWDRQLLSLSSCDDDESESENDMDSFVGDLENLLDAEEWEESNMSK
NDKLDGVNGPKMRRRPYQVVTDEEVEDEAAEYAELRRLLMKDEEKKNMNTEFVRKDSVIG
KKHMATQLDASFLVTESTVKHTTNVSVYKERKPVRENFFCGACGQPGHMKTNKHCPKYRA
TTESHPEGIYVKKSAGTPSSSDISGQVKVEPIKNKKTAPKSPTKVSVDEAPKGDNSTSKT
GGLTLRFKCGIPAGGMLDKPGSETPGRSMEEPEESKVEANRPLHSLMPAFIRESESHKPS
VSGQSFSNTERNQAATSRPTMSITQPSLRMDKEHVIQRPKETEQPQKKLVIKRSKVITDH
DRSSLEMSSQFESRKTMRMAEPEGFQRQQRFRLSGLHRGPKEGRVWQEEREISTERHREA
RVRRDYDDITGFEKANEIGSEREEKERQQKLYLEDYPRRRNDRRLLERVQKVRSQYASDF
ERNVAEYAPQPKRRKKGEVGLANILEVIVDTLRAKEVNVSYLFLKPVSKKVAPDYLDIVE
RPMDLSTIRDKVRRMEYRDREQFRHDVWQIKYNAHLYNDGRNPGIPPLADELLAKCDGLL
DRYRDELTEAEKGIVIRID
NT seq
5280 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacacaaagaggaggacgatgaagagtatggggacagaagcaggggacttgaa
tttatctttggaaacgttgatcactctggtgatttggatgctgattaccttaatgaggac
gccaaagaacatctttctgcattggcttcgtctctgccagacataatgttgatggcaagt
tcagactataaaacaagtgatccagctgagcaagattattacaaagaaaaagctacggat
gctgttgattatggggatattgatgaggagtatgacgggcctgaagttcaagtagttact
gaggaagatcatctactgccaaaaagagagtatttttcgtctgcagctgcctcgggtagt
ttatattccaaagcttctgtgtttgatgatgacgattatgatgaggaagaagaacaagag
gtggaaaacattccatttgaagaatcttttgattctgaagatagtgaatcagttgtctta
aaggaggacaagggtttggagtatgaagaggaggctaacatcttgggaaatgaggaacgg
atggacacaaatgagaaaagtgcaacatcactatctactctgtatgttgaagatggtatg
gtcgtcttacaattctctgagatatttgctattcataagccaccacagaaacggaccaag
agagaaaatagatatatcacttatcgagacagatacaaatctatggagcttgttgaagat
gatgaggagttacttcttaagagccatggtaggatcgacactcgtctgaaacaagctgct
gatctgattcagctggatgttccgttaccaacaagaggggatttacagcttgcaaaagct
ggcacattcggaagcatcataccagaatcgagagaatttaccaagctaggacgagattca
tacacaatgagtgaactgttgaagcaggaattagaagacgatagatcatctctgtgccag
ccacagtcatcaatggaagtttttcctcttgaccaatatgaatgggaaaatcgaattatt
tgggaaagttctcctggagttagtggtaattcttttgaaagcgtcgaatctgaaattgag
tcagaaggcctgcttattcaaggatcaaattcagagactgaacaagaaagcttaaacgtg
gtgaattctatagagcaagctcaagctgaaaataataaacctgtatctttttatgtcagt
cccttggagcctcttggttcacacactactagtgagtccactaacaaaagtagacgtcat
ccgcaactccttaggttagaatctcagtgggatgaggatcatcctagtgaaaatgacgat
gctggagggaagagttcaaaacagcttaaaagtgacgctcttggacgctttagcagactt
cgattgcaagagagggatatgggggacgacgcatggttagatagcataatatgggagtca
gataaagaggtgagcaggtctaaactaatatttgaccttcaagatgagcaaatggtcttt
gaaatcccggacaacagggaaagcaaagatcttcaacttcatgctggatctatgattcta
tcccgctcttcaaagcccaaggatgaaagatttcaggaaggctgtggatcaaattatggg
tgtcaattcaatatttctaatgacaagttctatatgaatgggaaaagctgtcagcaactg
caggcaaatgctaatcaattcggcgtacacagtttgagagttcttcattcagcgtcagcg
attaaattgcagacaatgaagaacaaattgagcaataaagacatagcaaattttcaccgg
cccaaagctttgtggtatccacatgacaatgagctagcaatcaaacagcaagaaaagtta
cccacccaaggatccatgcaaattgtagttaagagtctggggggtaaaggaagcaagatt
cacgttggcatagaggagtctgtctcttatttaaaagccaaggcttcgaggaagctagat
tttaaggaaactgaagcagtaaagattttctatatgggaaaggaacttgaggatgaaaag
tctcttgctgaacaaaatgttcatccaaattctttggtccatattttacgcaccaaggta
catctgttgccatgggcccaaaagcttcctggcgaacataaatctttgagacctcctggg
gcattcaagaagaaatcagacctatctactaaagatggccatgttttcttaatggagtat
tgtgaagagaggcccttgatgctgagcaatgcaggaatgggtgccaatttgtgcacgtat
tatcagaagtcgttcccagaggatcaacatgggaacttgctgcgcgataaaaatggcact
ctagggaatgtgatgaatctagaacctggggagaaatctcctttccttggggaaattcag
ggtggctgcagtcagtcatctattgaaacaaacatgtacaaagcgcctatttttcctcat
aagttgcaatcaacggattatctgttggtccgttctcctaaaggaaagctctgtctaaga
cgtattgacaagatatgcgctgttggacaacaggaacctcgaatggaagtaatgtctcct
gcatcaaagaatctgcagacttttttggtgaacaagatgttggtctatgtggaccgagaa
tttaagcatcgccaccgtattcctgcagacgaggtgtctttcttattttcgaacttatcg
gatgcagtggtcaagaagaacatgagaattcatggtattgttctagagagggataaaaat
ggccaaattttctggtacaataaacataggtttgacaagtttccacatgagattgagttg
aaaaatcttgtggcgccagaggatgtgtgttcttatgagagtatgctagctgggctgtac
cggctcaaacatttagggatctcccagtttacattgcctgccagcatatcaactgcatta
gctcagctcccagatgaagccatttctcttgccgctgcttcacatattgagagggagttg
cagattactccatggaatctgagcagtaactttgttgcttgtacaactcaggacagagca
aatatagaacgtttggaaattactggagttggcgatccctctggacgaggtctaggattc
agctacgtccgagctgcgccaaaagtaccagctgcagctggacgtatgaagaaaaaggaa
gcagcgtgttgcggagccccaactgtaactggtacagatgctgatcttcgcagattaagc
agggaagcagctcgagaggttcttctcaagttcaatgttcctgatgagaaaatggccaag
caaaatcgatggcacctgatagctatgatacgcaagctatcgagtgagcaggctgcatct
ggtttacttaaggttgaccctacgacaataggtaagtacgcccgtggccagagaatgtct
ttcctacagttacaaccgcaggcccgggaaaagtgtcaggagatttgggataggcaactt
ctgtccctttcatcttgtgatgacgatgagtctgagagtgaaaatgacatggactccttt
gtcggagatctggaaaatctacttgatgctgaggagtgggaagaatctaatatgtctaag
aatgacaagttggatggagtcaacggacccaaaatgagacggcggccatatcaagttgtg
acagacgaagaagttgaagatgaagctgctgaatatgccgagttacgcagattgctgatg
aaagatgaggaaaaaaagaacatgaatactgaatttgtcagaaaggacagtgtcattggc
aagaaacatatggccacccaacttgatgcatctttcttagtaactgagagcacggttaaa
cacacaacaaatgtcagtgtatacaaggaaagaaaaccagtgagagagaatttcttctgt
ggagcctgtggtcagcctggacacatgaaaaccaataaacactgcccaaaatacagagca
actacagaatcacatccggaaggtatatacgtgaagaagtctgctggaacaccgagttct
tcagatatatcaggccaggtcaaggtggaacctattaaaaacaagaagactgcgccaaaa
agtccaacaaaggtttctgtagatgaagctccgaagggagataattcaacttccaaaacc
ggaggtcttactctgaggtttaaatgtggtatacccgctggagggatgttagataaaccc
ggttctgaaactccaggacgttctatggaagaacctgaagaatcaaaggtcgaagctaac
agacctttgcattcattgatgcctgcatttatcagagagagcgagtctcacaagccttct
gtttctggacaatcattttctaatacagagagaaatcaggctgcaacaagcaggcctact
atgtcaatcacgcagccatcattacgcatggataaagaacacgtgatacagcggccgaaa
gaaacagaacagcctcagaagaaacttgttataaaacgttcgaaagtgataactgatcat
gacaggagtagccttgaaatgagttcacagtttgagtccaggaagacaatgagaatggca
gaaccagaaggttttcagaggcagcagagattcagattgtcaggactacaccggggacca
aaagagggtagagtatggcaagaagaacgggagataagtacggaaaggcacagggaagca
agggtgagaagagactatgatgatattactggatttgaaaaagccaatgagatagggagt
gaaagggaggaaaaggaacggcaacagaagttatatctagaagattatcctcgtcgaaga
aacgatagaagattgttagaaagagttcagaaagtcagaagccagtatgcctctgacttt
gaaaggaacgtggcagagtacgcacctcaaccaaaacgacgcaaaaagggagaggttggc
ctagcaaacatcttggaagtcatagtggacacactaagagccaaagaagtaaacgtgtcg
tacctcttcttgaaacctgtctcaaagaaggtggctccggactatcttgacattgtggaa
cgccccatggatctctcgacaatcagggacaaggtgcggaggatggagtacagagacaga
gagcagtttagacatgatgtctggcagatcaaatacaatgctcatctttacaacgacggg
cgtaacccggggataccgcccttggcagatgagttactggcgaaatgtgatggcttgttg
gatagatatagagatgagttaacagaagcagagaaaggtatagtaattcgcattgactga
DBGET
integrated database retrieval system
