Raphanus sativus (radish): 108812004
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Entry
108812004 CDS
T06014
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108812004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108812004
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108812004
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108812004
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
108812004
NCBI-ProteinID:
XP_018439634
UniProt:
A0A6J0JY44
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Position
6:complement(47518623..47519781)
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AA seq
275 aa
AA seq
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MSLFLKDDSIQIREVWSDNLESEMALIREIVDDFPFVAMDTEFPGIVCRPVGTFRTNTEY
HYETLRTNVNLLKMIQLGLTFSDERGNLPTCGSDDKYCIWQFNFREFDLSSDIFAHDSIE
LLRQSGIDFVKNSRNGVDSRRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQDL
PETQGGFFEMIRVYFPRVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT
SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQSVH
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtttctaaaggacgactcgattcaaatccgcgaggtatggagcgacaacctc
gaatccgaaatggctctgatccgcgagatcgtcgacgacttccctttcgtggcgatggac
acggagttccccgggatcgtctgcagaccggtggggactttcagaaccaacaccgagtac
cactacgagacccttaggacgaacgtcaacctcctcaagatgatccagctcggcctcacc
ttctccgacgagagaggcaacctcccgacctgcggttccgacgacaagtactgcatctgg
cagttcaacttccgcgagttcgatctctcctccgacatcttcgcccacgactccatcgag
cttctccgtcagtcggggatcgatttcgtcaagaacagccgaaacggcgtcgattcgagg
cgtttcgcggagcttctgatgtcttcagggattgtattgaacgagaatgttcactgggtt
acgtttcacagcgggtacgatttcggttacttgctgaagctgctgacgtgtcaggatctc
ccggagacgcaaggggggttctttgagatgatcagagtttatttcccgagggtttacgat
attaagcacttgatgaagttttgtaatagtctccacgggggtctgaacaagttggcggag
ctgcttgaggttgagcgagttgggatttgtcaccaggcggggtcggatagtttgttgact
tcgtgtacattcaggaagctgcaggagaatttcttcattggttcgatggagaagtactct
ggtgttttgtacggattaggtgttgaaaatggtcagagtgttcactga
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