Raphanus sativus (radish): 108812034
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Entry
108812034 CDS
T06014
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108812034
09122 Translation
03013 Nucleocytoplasmic transport
108812034
03015 mRNA surveillance pathway
108812034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108812034
03041 Spliceosome [BR:
rsz03041
]
108812034
03009 Ribosome biogenesis [BR:
rsz03009
]
108812034
03012 Translation factors [BR:
rsz03012
]
108812034
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108812034
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108812034
mRNA cycle factors
Stress granule specific factors
108812034
Spliceosome [BR:
rsz03041
]
Complex C
Other components
EJC/TREX
108812034
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
Helicases
108812034
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
eIF-4
108812034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Utp25_C
Helicase_RecD
Flavi_DEAD
CMS1
AAA_22
TniB
DUF1198
Motif
Other DBs
NCBI-GeneID:
108812034
NCBI-ProteinID:
XP_018439676
UniProt:
A0A6J0JX64
LinkDB
All DBs
Position
6:6800998..6803613
Genome browser
AA seq
408 aa
AA seq
DB search
MAEANPSRGNGRRGGGPMDDDKLVFETTEGIEPITNFNDMGIKEDVLRGVYEYGFEKPSA
IQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQIVDTSSREVQALILSPTRELASQTE
KTIQAIGLHANIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRSLRTRGIKL
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKR
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSEKMRTNNFT
VSSMHGDMPQKERDEIMNQFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcgaatcctagccgtggcaacggtagaagaggcggtggaccaatggacgac
gacaaactagtcttcgaaacaaccgaagggatcgagcccatcaccaatttcaacgacatg
gggatcaaggaagacgtgctccgcggcgtctacgagtacggcttcgagaaaccctccgcg
atccagcagagagccgtcatgccgattctccaaggccgcgacgtcatcgcccaggctcag
tccggtaccgggaaaacctcgatgattgctctctccgtctgccaaatcgtcgacacttcg
tctagagaagttcaggcgttgatattgtctccaacgagagagctggcttcgcagacggag
aagactattcaagcgattgggttgcacgcgaatattcaggcgcatgcgtgtattggtggg
aagagcgttggggaagatattaggaagctggagaacggtgtccatgttgtgtctgggacg
cctgggcgtgtttgtgatatgattaagaggagaagtttgcgtaccaggggtattaagctt
ttgattcttgatgaatctgatgagatgctgagcagagggttcaaggaccagatttatgat
gtttacagatatcttccacctgatcttcaggtttgcttagtttctgcaactcttcctcac
gagattttggagatgacatcaaagtttatgacggagccagtaaagatacttgtgaagcgt
gatgagttgactcttgaaggcattaaacaatttttcgttgctgttgagaaggaagaatgg
aaatttgatacactttgtgatctttatgacacacttactattactcaagctgttatcttc
tgcaacactaaacgaaaggtggattggctaagtgagaaaatgaggactaacaacttcaca
gtttcatcaatgcacggtgacatgcctcagaaggaaagagacgaaatcatgaatcagttc
cggtcaggcgacagtcgtgttttgatcacgacggatgtatgggcacgtggtattgatgtg
cagcaagtttctcttgtcatcaattatgatcttcctaacaaccgtgagctctacatccat
cgtattggaagatctggtcgtttcgggcgtaagggtgttgcgatcaactttgttaaaagc
gacgacatcaagatcctcagggacattgagcagtactacagtacccagattgacgagatg
ccaatgaatgtagctgatcttatctaa
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