Raphanus sativus (radish): 108812076
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Entry
108812076 CDS
T06014
Name
(RefSeq) vacuolar protein sorting-associated protein 35C
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108812076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108812076
Membrane trafficking [BR:
rsz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
108812076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
108812076
NCBI-ProteinID:
XP_018439731
UniProt:
A0A6J0JXC0
LinkDB
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Position
6:39073375..39078210
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AA seq
790 aa
AA seq
DB search
MIADDDEKWLAAATSAVKQNAFYMQRAIDSNNLKDALKFSAQMLGELRTSKLSPHKYYEL
YIRASDELRSLEMFFRDETARGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTA
KDILKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSELEGDAETHMDALEFVLQNF
TEMNKLWVRMQHQGPAREKEKREKERNELRDLVGKNLHILGQLEGVDLVVYRDTVLPRIL
EQVVNCKDELAQCYLMDCIIQVFPDDFHLQTLDVLLGACPQLQPSVDIKTVLSGLMERLS
NYAASSVEALPNFLQVDAFSKLNHAIGKVVEAQVDLPASASVTLYLFLLKFTLHVHSDRL
DYVDQVLGSCVSQLSATGKLCDDKASKQIVAFLSAPLEKYNDVVTILKLTNYPRVMEYLD
HDKNKAVAVIIIQSILKNDTRIATADEVDALFELIKGLIKDFDGLTDNDEIDEEDFQEEQ
NFVARLVHFLYNDDPEEMSKIIFRVRKHILTGGPKRLPLTIPPLVFSALKLIRRMRGGDE
NPFGDDTSTPQKILQLLTETVEVLSDVSASELALRLYLQCAQAANDCELETVAYEFFTKA
YLLYEEEISDSKAQVTALRLIIGTLQRMRVFNAENREILTHKATGYSAKLLKKPDQCRAV
YECAHLYWAEEGENLKDGERVVHCLKRSQKIADAVQQMSNKSRGASSTGSVSLYVELLNK
YLYFLEKGYPQVTGETIQSLAELIRGETKKAESGAGSFITSTLRYMEFQRQQEDGGMNEK
YQKIKMEWFE
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccgacgacgatgagaagtggctcgctgccgccacatccgccgttaagcaaaat
gctttctacatgcagcgcgcgatcgactccaacaatctcaaagacgcgcttaagttctct
gctcagatgctcggcgagcttcgcacttccaagctttctcctcacaaatactacgaactc
tatattcgagcttctgatgagctgaggagtttggagatgttctttagggatgagacggcg
cgtggttgctccattgctgagctttacgagcttgtgcagcacgccggtaacattttgcca
agattgtatcttctatgtaccataggatctgtatatatcaaatccaaggatgtcactgct
aaggatattttaaaggatcttgttgaaatgtgccgagctgttcaacatcccttgcgtggt
ctcttcttgagaagttaccttgctcaagtcactagggataagttgcctagcattggttct
gagttggaaggagatgctgaaacacacatggatgctttagagttcgtgcttcagaatttt
actgagatgaacaaactatgggtccgaatgcaacatcagggacctgctcgggagaaggag
aaacgggagaaagaaaggaatgaactacgtgatcttgttggaaagaaccttcatatactg
ggtcagttggaaggcgttgaccttgttgtctacagagatactgttcttcctagaatactg
gagcaggttgtcaactgcaaggatgagcttgcacagtgctatttaatggattgcattatt
caagtttttcctgatgactttcaccttcaaactctcgatgtattattgggtgcttgtccg
caacttcagccgtctgttgatatcaagacagtcctttcgggtttaatggaaaggctttcg
aactacgctgcatctagtgtggaagcattgcctaatttcttgcaagtagatgccttttca
aagttgaatcatgccattgggaaggttgtagaggcacaggtggacttgccagcctcagca
tctgtaacattatatttgtttcttctgaaattcactctccatgtccattccgatcgtcta
gactatgtggaccaagttttgggatcttgtgttagccaactatctgccacaggaaaactt
tgtgatgacaaggcatcaaaacagatcgttgcgtttcttagcgctccattggagaaatat
aatgatgtggtaactattttgaagcttaccaactatcctcgagtaatggaataccttgac
cacgataaaaacaaagcagtggcagttattataattcagagcattttgaaaaatgatact
cgcattgcaactgctgatgaggttgacgcattgtttgaactgataaagggacttatcaag
gattttgacgggctaactgataatgatgagattgatgaagaagatttccaggaagagcag
aactttgttgcacggttggttcactttctctacaatgatgatccagaagaaatgtctaag
ataattttcagagtaaggaagcacatcttgactggaggacctaagcgtctacctcttacg
ataccaccccttgtcttttccgctctaaagttaattcgaagaatgcgaggtggagatgaa
aacccatttggagatgacacgtcaacaccacagaaaattctacagctcttaactgagacc
gtggaagttctatctgatgtctcggcatctgagttggcattacgactctacttgcaatgt
gctcaggcagcaaatgactgtgaattagaaacagttgcatatgagttcttcacaaaggca
taccttctgtatgaagaagaaatttcagattcaaaggcacaagtaacagcactacgttta
ataatagggacactccagcggatgcgtgtatttaatgctgagaacagagagattttgact
cacaaggcgacagggtactctgcaaaactacttaagaagccagatcagtgtagagctgtt
tacgagtgtgcgcatctttactgggctgaagaaggcgagaacctaaaagatggagagagg
gttgtccattgtctgaagagatcacaaaaaattgcagatgcggttcaacaaatgtccaac
aaatcccgtggtgccagtagcaccgggtctgtgtctctgtatgtcgaactgctgaacaag
tatctctacttcttggagaaaggatatccacaagtaacaggcgaaacaatccagagttta
gctgaattaatcagaggcgagacgaagaaagctgagtcaggcgcagggtcattcataacc
agcactctgcgttacatggagtttcagagacaacaggaggatggtggcatgaatgagaaa
taccagaaaatcaagatggaatggtttgagtga
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