Raphanus sativus (radish): 108812210
Help
Entry
108812210 CDS
T06014
Name
(RefSeq) E3 ubiquitin-protein ligase UPL6
KO
K10589
ubiquitin-protein ligase E3 C [EC:
2.3.2.26
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108812210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108812210
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108812210
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
HECT type E3
108812210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
IQ
Motif
Other DBs
NCBI-GeneID:
108812210
NCBI-ProteinID:
XP_018439902
UniProt:
A0A6J0JW48
LinkDB
All DBs
Position
6:5881356..5893570
Genome browser
AA seq
1031 aa
AA seq
DB search
MFFSGDHSTRKRVDLGGRSTKEGDARKVLEQTKVERSRRLLQKQHNSAALKIQRFFRGRR
TMAIERSKVRRDFCETYGDICPNVVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCR
LLRSFAHSTGDILSLFSGLDYSTEHNMVDFRVKKLAFTCIDAIHQNRDLLRDQLLVTPEE
ANISTAILMDAMSLLLDPKLPWVCKIVSHLQKRNIFKLVREIVTTAKEGGRGLTINGSIL
SLERVLVLVVPHVGREPCCCPVVDPRWSFSSMILTIPFIWKLFPNLKVVFANPSLSQYYI
HQMAFCIQKDTHVLPIDTNTEFPGYACLLGNTLEIANVVLSKPECSLDMAIDIASVATFL
LETLPAVKSSERESRQSSSEVDDMLIDDVQELVLNRTLEQQITTNALDSRFLLQLTNVLF
HQGSVGTQSYDEDKEALAIGTGSSFLYAAFNTLPLERIMTVLAYRTELVAVLWNYMKRCH
ENQKWSSMPSVLAYLPTDSPGWLLPLVVFCPVYKHMLTIVDNEEFYERGKPLSLQDIRLL
IIILKQALWQLLWVNPLTQHNSGKSVSNDLLKKNSVGLIQNRVGVVVAELLSQFQDWNNR
QQFTSSSDFQADTVNEYFITQAITEGSRANYILMQAPFLIPFTSRVKIFTTQLATARQTH
GPEEIFTRNRFRIRRDHILDDAYNQMSALSEDELRGPIRVTFVNELGVEEAGIDGGGIFK
DFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHKQHLQFFHFLGSLLAKAMFEGILV
DIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEYGER
TEEELLPGGKDMRVINKNVITFIHLVSNHRLNFQIRQQSSHFLRGFQRLIPREWIDMFNE
HELQVLISGSADSLDIDDLRENANYSGGYNAGHYVIDMFWEVMKSFSTENQKKFLKFVTG
CSRGPLLGFKYLEPAFCIQRAGGSVSNEAVDRLPTSATCMNLLKLPPYQSKEQLETKLMY
AISAEAGFDLS
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgttcttctcgggcgatcattcgactcgaaagcgagtcgatttaggtggccgtagcacc
aaggagggagatgctcgcaaggttcttgagcagaccaaggttgagcgcagccgtcgtctc
ctacagaagcagcacaactccgccgccctcaaaattcagagattctttagaggtagaaga
acaatggccattgagcggtccaaggtgaggcgtgacttctgtgagacctatggggatatt
tgcccgaatgttgttgataggcattgctttgagccgggttcaagtttcctccgtcagttt
ctgtttttcttcaaggcacaaaactcgggggattttgtgatacttgtggagacgtgtcgt
ctactgcggagttttgcacacagcactggtgacattctaagccttttctctggcttggac
tactctactgagcataatatggtggattttagagtaaagaaacttgcatttacctgcatc
gatgctatacatcaaaatagggaccttttaagggatcagctcttagttactcccgaagaa
gctaacatttcaacagctatcttgatggatgcaatgtcgttgttgctagatcctaagctg
ccttgggtctgcaaaatagttagtcatctacagaaaagaaacatattcaaactggtccga
gaaattgtgactacggctaaggaaggcggaagaggtctgactattaacggcagcatcctt
tcactagaaagagtattggttctggtagtaccacatgttggccgtgagccatgttgctgc
cctgttgttgatccacgttggagtttctcatctatgatccttaccataccctttatatgg
aagctcttcccaaacttgaaagtggtctttgccaacccaagtctaagtcaatactacatt
caccagatggctttctgtatccaaaaggatacccatgttctcccaatagatacaaacaca
gaattccctggttatgcttgtcttcttggtaatacattggaaattgcaaacgtggtcttg
tcaaagcctgaatgttcattggacatggcaattgacattgcatcagttgcaactttctta
ttggagacacttcctgctgttaagtcatcagaaagagaaagcagacagagctcttctgaa
gtggatgatatgttgattgacgatgtacaagaattagtcttgaataggactctggagcag
cagataaccaccaatgctctagactcacgttttcttcttcagttaacaaatgttttgttc
catcagggttcggttggtacgcagtcatatgacgaagataaagaagcactagctattggc
acaggcagttcttttctgtatgcagcattcaacactctccctcttgagcgaataatgaca
gttttggcttatagaaccgagcttgtagctgtgttgtggaattatatgaaacgatgccat
gaaaaccagaagtggtcatccatgcctagtgtcttagcttatcttccaacggattctccg
ggttggctattacctctggtcgtcttttgtcctgtttataagcatatgcttacgatagtc
gacaatgaggagttttacgaacgaggaaagccactatcgctacaagatatcaggttgctc
atcatcattctcaagcaagctttatggcagttactatgggtgaatccacttacgcaacat
aactctgggaaatctgtctccaacgacctcttaaagaagaactctgttggcttgattcag
aacagggttggggttgtagttgctgagttactttcacagtttcaagattggaacaaccgg
caacaattcacttcctcgagcgactttcaagctgatactgtgaatgaatattttatcact
caggccataacggaaggttcaagagccaactacatactgatgcaagctcctttcctgatt
ccgtttacaagcagagtcaaaatattcacaacacaattagcaacggcgaggcagactcat
ggacctgaagaaatttttactcgaaatcggttcagaatacgaagagatcacatcttggat
gatgcttacaatcaaatgagtgcattgtcagaggatgagctccgaggaccaattcgtgtg
acatttgtcaatgaactcggagttgaggaagccggtattgatggtggtggcattttcaaa
gactttatggagaaaattacccgagcagcctttgatgtgcaatatgggttgtttaaggaa
accgctgatcacatgctttatcctaatcctggatcaggaatgatacataagcagcatctc
cagttctttcattttctcggcagtcttctcgcaaaagctatgtttgaagggattctagtt
gatataccatttgcaacgtttttcctcagtaaattgaagcaaaagtacaactatttgaac
gatttgccctctctggatcctgagttgtataggcatcttatatttctgaagcgttataag
ggtgacatatcagacttggagctttactttgttattctgaacaatgaatatggagagaga
acagaggaagagctacttccaggaggaaaagacatgcgagtcataaataaaaatgttata
actttcattcatctggtttccaatcataggttaaactttcagatacgccagcagagttct
catttcttgagggggtttcagcgactcattccgagagaatggatagacatgttcaatgaa
catgagctccaggttctcatatctggttcagctgatagtttggatattgacgacttgcga
gagaacgccaattattctggagggtacaacgctggacattatgtgattgatatgttctgg
gaagtaatgaaaagcttctcaaccgaaaaccagaagaaattcttgaaatttgtgacgggc
tgttcaagaggaccactgctaggtttcaagtacttggaacctgcattctgtatacagagg
gctggtggtagcgtgagtaatgaagcagttgatagactaccgacatcagccacttgtatg
aaccttcttaagcttccaccctatcaaagcaaagagcaactggagaccaaattgatgtac
gccataagcgcagaagcaggctttgatctgagctga
DBGET
integrated database retrieval system
