Raphanus sativus (radish): 108812278
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Entry
108812278 CDS
T06014
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108812278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108812278
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108812278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
ATG17_like
Motif
Other DBs
NCBI-GeneID:
108812278
NCBI-ProteinID:
XP_018440001
UniProt:
A0A6J0JY02
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Position
6:52512512..52516228
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AA seq
783 aa
AA seq
DB search
MSGFSFGQSNTGGGGSLFGSSSVASSSSASSTSSPLAFSFNQSTGFGFGANASAPASSTT
PSFGFGASASAPTSSATPSFGFGASASAPASSATPSFGFGASAPAPTSSAAPSFGFGASA
TASGPAASTTPSFGFGATAPTASTPASSAAPSFGFGAPASTGFGFGSSAASSSGSAPSLF
GSSTNASAASPGSSPFGFVTSSASQPGASSSATVSAPSPFGAPAPASGSTSLFGSSSSLF
SAPSSAASSSSPLFGTSSSAPGSTASLFGAQSSATASTPSPFGAAAPSSSASGSSPSIFG
GAAGSSASGSSPSTFGGAAASSASGSSPSIFGAAASSASGSSPSIFGATGSSQSMFGSST
TSASSTLSLFASSLSGAAAASSPSPFGFSTVTSSSTTTNPSPASASTGLSFLKSTGISTT
TATSASAPSQSSSSSFSFATPASSGFQSSTGFNLSTASSAPPSTTSPALFSTATTTTTSF
STPAAISAPSSSAAASTTTFPSFGVGSSAANTTTATSPAPAFGFTSSSSAAAATTTFAVP
QAASTTATTTQTSLVVASTSGTSTTTVAAPLAGAPKLPSEITGKTVEEIIKEWNTELEER
TGRFRKQANAIAEWDKRILQNRDVLLRLEIEVAKVVETQSSLERQLELIDTHQQEVDKAL
KSMEEEAERIYNDERKSLLDDEAASTRDAMYEQSELVERELEHMTEQIRSIIQSVNANQG
GELEAVDGMNPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKIASQGSGGDRELMMAPKH
WMS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggttttcgtttggtcaatcgaacaccggtggaggaggatccttgttcggatct
tcctccgtagcaagctcctcgtctgcttcatccacctcatctccgttagctttctccttc
aatcaatccaccggatttggattcggagccaacgcatcggctcccgcttcctcaacgact
ccatcgttcggatttggagcctccgcatcggctcctacttcctccgcgactccatcgttc
ggatttggagcctccgcatcggctcctgcttcctccgcaactccatcgtttggatttgga
gccagcgcaccggctcctacttcctccgcagctccatcgtttggatttggagcttccgcc
actgcatcgggtcctgctgcatccacaactccatcgtttggattcggagccaccgcaccc
acggcatcgactcctgcttcctccgcagctccgtcatttggattcggagcccccgcatcc
accggattcgggttcggatcctctgctgcgtcttcgtctggttctgctccctcactgttt
ggatcctctaccaatgcttccgcggcttctcctggctcttctcctttcggattcgtaact
tcatcggcttctcagcctggtgcttcttcttctgcgactgtttcagcaccatctccgttc
ggagcgccagcgccagccagtggttcaacatccctctttggatcttcctcgtctttattc
tccgctccttcctctgcggccagctcgagttctcctctcttcgggacttcctcatcggcc
cctggctcaaccgcttctcttttcggcgcacaatcttcagccaccgcctccacaccttcc
cctttcggcgctgcggcaccgtcctcatcagcctctggctcctcaccgtcaatcttcggc
ggggcggctgggtcctcagcctctggctcctctccttcaacctttggcggggcggcagcg
tcatcagcctctggctcctctccttcaatctttggtgcggctgcgtcctcagcttctggt
tcctcaccatccatctttggagccaccggttcatctcagtccatgttcggatcatctact
acgtcagccagttcaacactgtctctcttcgcatcgtccttgtcaggcgcagcagcagct
tcttcaccatccccatttggattttccaccgtcacttcctcctccacaacaaccaatccc
tctcccgcctcggcttctaccggactctctttcttgaaaagcacaggaatctcaaccacc
actgctacctccgcttctgctccttcacaatcatcatcttcctccttctcatttgctaca
cccgcaagttcaggctttcaatcttctacggggtttaacctttcaaccgcaagctcagct
cctccatccaccacatccccagcattgttctctactgcaaccaccaccaccacgtccttt
tcgactcccgctgccattagtgcaccatcttcctcagctgcagcttctacaacgacgttc
ccttcttttggtgtgggctcatctgcagccaacactactacggctacttcccctgctcca
gcatttggttttaccagctcgagttctgctgctgctgcaactactacttttgctgtaccc
caggcagcatcaactactgctactacgacgcagacatcacttgttgtggcttcgactagt
gggacaagcacaacaactgttgcagctccactggctggtgctcccaaattgccatctgaa
ataactggcaaaactgttgaggagattatcaaggagtggaatactgagctagaagagcgt
acagggagattccggaaacaggcaaatgcaatagctgaatgggataagcggatcctgcag
aaccgtgatgttctattgaggcttgagattgaagttgcaaaagtggttgaaacacagtct
agtttggaaagacagctggaattaatcgacactcatcaacaagaggttgacaaagctttg
aaaagcatggaggaggaggctgagcgtatatataatgacgagcgcaaatcgcttcttgac
gacgaagcagcatcaacaagagatgcgatgtatgaacagtctgagcttgtggaacgagaa
ctggagcatatgactgaacaaatcagatcgataattcaatccgtaaatgcaaaccagggt
ggagaactagaagcagttgatgggatgaatccattggatgtagtagtgaggatcttgaac
aatcaactcagttccttgatgtggattgatgagaaagcagaggagttctcatctcggatt
caaaagatcgcatctcagggctctggtggagaccgtgaactgatgatggctccaaagcac
tggatgtcttga
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