KEGG   Raphanus sativus (radish): 108812384
Entry
108812384         CDS       T06014                                 
Name
(RefSeq) cullin-4 isoform X1
  KO
K10609  cullin 4
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03420  Nucleotide excision repair
rsz04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108812384
  09124 Replication and repair
   03420 Nucleotide excision repair
    108812384
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rsz04121]
    108812384
   03400 DNA repair and recombination proteins [BR:rsz03400]
    108812384
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rsz04147]
    108812384
Ubiquitin system [BR:rsz04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     108812384
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      108812384
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      108812384
Exosome [BR:rsz04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   108812384
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 108812384
NCBI-ProteinID: XP_056844739
UniProt: A0A9W3BZS7
LinkDB
Position
6:20556598..20568298
AA seq 776 aa
MSLPTKRSSYSSPPMKKSKNTPSADKLRRFPIEEEEEDPTPSAANLSRKKATLPQPSKKL
VIKLNKAKPSLPTNFEDTTWDNLQSAIRAIFLKQPFSFDLERLYQAVDNLCLHKLEGKLY
QRIEKECEEHISVALQSLVGQDTDLSVFLSLVEKCWQDFCDQMLMIRSIALSLDRKYVIQ
NPNVRSLWEMGLQLFRKHLSLSPDVEQKTVTALLRMIEKERLAEAVNRTLLSHLLKMFTA
LGIYTESFEKHFLECTSEFYAAEGMKYMQQYDVPEYLKHVEGRLHEENERCILYIDPSTR
KPLISTIEKQLLERHTIGILDKGFTPLMDGRRTEDLQRMYTLFSRVNALESLRQALSSYI
RKTGQKIVMDEEKDKDMVQSLLDFKASLDIVWEESYCKNESFGNTIKDSFEHLINLRQNR
PAELIAKFLDEKLRAGNKGTSEEELENTLEKVLVLFRFIQGKDVFEAFYKKDLAKRLLLG
KSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEL
SVHVLTTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFT
KAKKELAVSLFQAVVLMLFNDAMKLSFEDIKDSTGIEDKELRRTLQSLACGKVRILHKYP
KGRDVQDGDEFDFNDTFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQIDAAIVRI
MKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQIYNYLA
NT seq 2331 nt   +upstreamnt  +downstreamnt
atgtctcttccaacaaaacgctcctcttactcttctcctcccatgaagaagtccaaaaac
actccttccgccgacaagcttcgccgctttcccatcgaggaagaagaagaagatcctact
ccctccgccgccaatctctcccgcaagaaagctactctccctcagccttctaagaagctc
gtcatcaagctcaacaaagccaagccaagtctacctacaaactttgaagatactacttgg
gataatctccagtcagctatcagagctatattcctcaaacagcccttttcttttgacctc
gagaggctttaccaggctgttgataacctttgcttgcataagctggaaggaaagctttac
caacggattgagaaggagtgcgaagaacacatctctgtagctttacagtcgttggttggg
caagacaccgatctgtctgttttcttgtctctcgttgagaaatgctggcaagatttctgt
gaccagatgcttatgatccgtagtatagccttgtctttggataggaagtatgtgatacag
aacccaaatgtacgttccttatgggagatgggcctgcagcttttccggaagcatctttct
ctgtcccctgatgttgagcagaagacagttactgctctcttaagaatgattgaaaaggaa
aggttagccgaagctgttaataggactttactaagccatctcttaaagatgtttactgca
ctgggaatatatactgagagctttgaaaaacatttccttgaatgcacttctgaattttat
gctgctgaaggaatgaagtatatgcagcagtatgacgttcctgagtacctgaagcatgtc
gagggaaggttgcatgaagagaatgaaagatgcatactatacatagatccatcgaccagg
aaacccttgatatcaactattgaaaagcaacttcttgagcgtcatacaattggtatcctt
gataagggattcacaccattaatggatggacgtcgtactgaggacctccagaggatgtac
accctgttttctagggtcaatgcacttgagtctttgaggcaagcgcttagttcctacatt
cggaaaactgggcagaagattgttatggatgaagaaaaagataaagatatggtacagtca
ctattggacttcaaggcttctcttgacatagtatgggaagagagctattgcaagaatgaa
tcatttggcaacaccatcaaagattcgtttgagcatctgataaaccttcgccagaatcgt
ccagctgaacttatagccaaatttttagacgagaagctccgtgctgggaataagggtact
tctgaagaagaattggagaatacccttgaaaaagtcttggttttgtttagatttatccag
ggtaaagatgtgttcgaggcattctataaaaaggatcttgcaaagagactcttgttagga
aagagcgcttcaattgatgctgagaaatccatgatctctaagctcaagactgagtgcggt
agccagtttacaaacaagctcgaagggatgttcaaggatattgaactgtcaaaggaaatc
aatgagtcattcaaacaatcgtctcaggccagaacaaaactgccatcgggaattgagttg
agtgtccacgttttaaccacagggtactggccaacatatccacctatggatgttaaactt
cctcatgaattgaatgtctatcaggatatcttcaaagagttctatttgagcaagtacagt
ggaaggaggttaatgtggcaaaattcattaggtcactgtgttttgaaggcagatttcacc
aaagctaaaaaggagcttgctgtttccctttttcaggctgttgtgttgatgttattcaac
gatgcaatgaaacttagctttgaagacattaaagactccaccggcatagaggacaaggaa
ctgaggaggactctccagtcgcttgcctgtggaaaagttcgtatcctgcataagtatcca
aagggaagagacgtgcaagacggcgatgaatttgattttaatgacacctttacagctcct
ctctatcgcattaaggtgaatgcgatccagatgaaagagacggtagaagagaacacgagt
acaacagagagagtattccaagaccgacaataccagattgatgcagccattgttcggata
atgaagacaagaaaagtcttaagccatactcttctaatcactgagctcttccaacagctg
aaattcccaataaaaccggctgatctgaagaagaggatcgaaagcctgatcgatcgggag
tacttggagagggacaagagcaaccctcagatatataattaccttgcttag

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