Raphanus sativus (radish): 108812396
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Entry
108812396 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108812396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108812396
03012 Translation factors [BR:
rsz03012
]
108812396
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108812396
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108812396
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108812396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
Ank_5
ATPase
Ank_2
AAA_7
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
108812396
NCBI-ProteinID:
XP_018440150
UniProt:
A0A6J0JWM6
LinkDB
All DBs
Position
6:complement(47029214..47035166)
Genome browser
AA seq
1381 aa
AA seq
DB search
MGKKRFRSENAAGDKKPPSVEATRIWAAKVIDDFRASVNQVYTFEHNLSNSERKVIHQMC
RKMGIQSKSSGRGDQRRLSIYKGSHKNGWNKEAKWRSSNREKLRCVSFPPGAHAILQDLF
THYPPCDGDTAAATSFNKYVGRSGKQWRDDFFRKPLFSRDEIVAKVASLSSRLRKDKALQ
EISKLRSKLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSTKRESCKI
VCTQPRRISAMSVSERISCERGESIGDNIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGK
GSVSYVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFG
GCHVVRVPGFTHPVRTLYLEDVLSILKSGGDNHLSSSNLNIPDQKLDLIDEDKLALDEAI
TLAWTNDEFDTLLDLVSSQGSPQIYNYQHQSTWLTPLMVFAGKGRISDVCMLLSLGADWK
LKSKDGMTASELAEAENHLEAAQIIREHSENSQSNSQQAQQLLDKYMATINPEQVDVSLI
LQLVRKICGDSEDGGAILVFLPGWDDINKTRQRLLDSPFFADSSKFDIICLHSMVPAGEQ
KKVFSRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLQSSWVSK
ANAKQREGRAGRCQPGICYHLYSRLRAASMPEFKVPEIKRMPVEELCLQVKILDPNCKTN
DFLQKLLDPPVDQSIANALSILQDIGALTPEEELTELGEKFGHLPVHPLISKMLFFAVLV
NCLDPALTLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKN
AKEKGLSAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGVIPSDISSCSQNSRDPGILRA
VLAVGLYPMVGRLCPSFGNNRRSLVETASGAKVRVHSLSNNFNLSSRKYDESLVVFDEIT
RGDGGMHIRNCTVARDLPLLLISTEIAVAPTESGDADDSEEDEDEDEDEETGGVEGDSSN
EESRRGEKMMSSPENSVKLVVDRWLPFKTTALEVAQMYILRERLTASILFKVRHPRENLP
PHLGASMHAIVCLLSYDGHAGLSSPPESLRSKHSRTEMYETGGCEEKPNSFLNSLFWSLS
LKENKPSSKQRNRIRQDGFNTAPTEAASMHRQQNNSQRKPKSANNVDSGKQKEKVFVRQT
NVVHQPEAASTTKQLKHKSANSLVSGNKKENESSDQVYGNQQPNTAPREAAVSMAKNQSS
KKTKSANNTDPGKKEEKVFVSHTNGIHQPETAYTAKQSKHKSSANSLVLGNKKENKPSDQ
VCGDQQPNTAPRVAAVLMAKHQSSKKTKTRSDLGKKQGIYVPKIDLHKRQREDKTDLKGT
A
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagaggttcaggtctgaaaatgcagctggtgacaagaagccaccttccgtc
gaagccactaggatttgggctgctaaggtcatcgatgactttcgagcctccgttaaccaa
gtttacacgtttgagcataacctatcaaacagcgaacgtaaagtcattcatcagatgtgt
cggaaaatgggtattcaatccaaaagttctgggcgtggggatcaaaggcgtctttccata
tacaaagggagtcacaaaaatggatggaacaaagaagctaagtggagatcatcaaacaga
gagaagctcagatgtgtctcttttcccccaggagctcatgctattcttcaggatttgttt
actcactatccaccttgtgacggagacactgctgctgcaacctcgtttaacaagtatgta
ggccgctctggtaagcaatggagagatgactttttcaggaaaccactgttcagccgtgac
gagatcgttgcaaaggtggcgtctttgagttctaggctgaggaaagataaagctcttcag
gagatctctaagctgcggtcaaagcttcccattacatcttttagagacgcaattacatct
gctgttgaatccaaccaggttattctcatttctggtgaaactggttgcgggaaaactact
caggtgcctcaatatcttttagaccatatgtggtcaaccaaaagagaaagttgtaaaatt
gtttgcactcaacctcgtcgtatctccgccatgtcagtttctgaaagaatatcctgtgaa
agaggtgaaagcattggagacaacattggttacaaggtgcgactgcagagcaaaggtgga
aggcactcatcagttgttttctgcaccaatggcattctcctgagggtgcttgtaggcaaa
ggatctgttagctatgtttccgacataactcacatcattgtggatgaaatccatgaaagg
gattgctactccgatttcatgttggcaattataagggacttgcttccatcaaatcctcat
ctccgtctgattctaatgagtgctacgcttgatgctgagagattttctggatattttgga
ggttgccatgttgtccgtgtccctggattcactcatccagtgagaaccttatatctggag
gatgtcctctctattcttaaatcaggtggagataatcatctaagctcttccaacttgaat
atacccgaccagaagcttgatttgatcgatgaagataaacttgctttagatgaagcaatc
accttggcttggacaaatgatgagttcgataccctcttagatctagtttcttctcaggga
agtccccagatctacaactatcagcaccaatcaacttggctaacaccacttatggtcttt
gctggaaagggaaggatcagcgatgtctgcatgctcctctcacttggcgcagactggaaa
ttaaagtctaaagatggtatgacagcttcagaattggccgaagcagagaatcacctagaa
gctgctcaaatcatcagggagcattctgaaaattctcagtctaattctcagcaagcacaa
cagttacttgacaagtacatggcgacaatcaatccggagcaggtagatgtgagtcttata
ctccagctagtaaggaaaatatgtggtgattcggaggatggtggtgccattcttgttttt
ctacctggatgggatgatataaacaaaacaagacagagattacttgacagcccttttttc
gcagacagtagcaaattcgacatcatatgtctgcactcaatggttccagcaggggaacag
aagaaagtttttagtcgccctcctcgaggttgccgcaagattgtgcttgcgacgaatatt
gctgaatcagcagttaccatcgatgatgtggtttatgtgatagatagtggccggatgaag
gaaaagagctatgatccttacagtaatgtttcaactcttcaatcttcttgggtctcgaaa
gcaaatgctaaacagcgtgagggtcgagcaggacgttgccaacctggcatttgttatcac
ctctattctagacttcgtgcagcctctatgccggagtttaaagttcctgagattaagagg
atgcctgtagaagaactctgcttacaggttaagatacttgatccaaattgtaaaacaaac
gatttccttcagaagttgttggacccgcctgttgatcaaagtattgcaaacgccttgagc
atcctacaggacattggggccctgacacctgaggaagagctgacagaacttggagagaag
tttggtcatctcccagttcatcctcttataagcaaaatgcttttcttcgctgttttagta
aactgtctggatccagcacttactctggcatgtgcagccgactacaaggaaccttttacc
atgcctatgtcgccagttgaaagacagaaagctgctgctgcaaaacttgaacttgcgtca
ctctgtggcggtgacagtgatcacctagcggttgttgccgcctttgagtgctggaaaaac
gctaaagaaaagggtctttccgctgagttttgctctcagtactttgtctctccaagtgct
atgaaaatgctggatcaaatgcgtagccaactcgagtctgaacttaaaagacacggggtt
attccaagtgacatctcaagttgtagccagaactcgcgtgatcctggtatactccgtgct
gtcctagcagtaggattgtatccaatggtcggaagattgtgcccatcttttggtaataat
aggagatctttagtggagactgctagtggtgccaaagtccgtgtgcattcgctttcaaac
aacttcaacttgtcgtcgaggaagtatgatgaatctttagttgttttcgatgagatcact
cgtggagatggaggcatgcacataagaaactgcactgttgctcgggatcttcctttgtta
ctgatctcaacagagatagccgtagctcctacagagagcggtgatgctgatgacagtgag
gaagatgaagatgaagatgaagatgaagaaacaggaggagtagaaggagattctagtaat
gaagagagtaggcgtggagagaagatgatgtcttcacctgaaaattcagtcaagttagta
gtagatcggtggctgcctttcaaaaccacagcccttgaagttgctcaaatgtacattttg
cgtgagcgactaactgcatccatcttgttcaaggtaagacatccacgggaaaatttgccg
cctcatcttggagcttctatgcatgcaatagtttgtcttctctcatatgatggtcatgct
ggactttcatctccaccggagtctttgaggtcaaaacattcgaggactgagatgtatgaa
accggaggatgtgaagagaaaccaaactctttccttaactccctcttttggtctctgagc
ctgaaagaaaacaagccttcttctaaacagaggaataggattcgacaggatggcttcaac
acggctccaacagaagctgcatcgatgcataggcagcaaaacaacagtcaaagaaagccc
aaatcagccaacaatgttgattcgggtaagcaaaaggagaaagtgtttgttaggcagacc
aatgtggttcaccaacctgaagctgcatctaccactaagcaattaaagcataaatcagcc
aacagtttggtttcgggtaacaagaaagagaacgagtcttctgatcaggtctatgggaat
caacaaccgaacacagcaccaagagaagctgctgtatcgatggctaagaatcaaagcagc
aagaaaaccaaatcagccaacaatactgatccgggtaagaaggaagagaaagtgtttgtt
agtcacaccaatgggattcaccaacctgaaactgcatataccgctaagcaatcaaagcat
aaatcatcagccaacagtttggttttgggtaacaagaaagagaacaagccttctgatcaa
gtttgtggggatcagcaaccaaacacagctccgagagtagctgctgtattgatggctaag
catcaaagcagcaagaaaaccaagacaaggtcagatttgggtaagaagcaaggcatttat
gttccaaagattgatctccataaaaggcaacgcgaggacaaaacagacttgaaggggact
gcatga
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