Raphanus sativus (radish): 108812402
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Entry
108812402 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108812402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108812402
03009 Ribosome biogenesis [BR:
rsz03009
]
108812402
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108812402
Spliceosome [BR:
rsz03041
]
Complex A
U1 snRNP components
U1 related factors
108812402
Complex B
108812402
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
Helicases
108812402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
108812402
NCBI-ProteinID:
XP_018440157
UniProt:
A0A6J0JWW0
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All DBs
Position
6:3559512..3563069
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AA seq
609 aa
AA seq
DB search
MAAATASSAVRYAPEDHSLPKPWKGLVDDRTGYLYFWNPETNVTQYDRPATSSKLSLSSS
VQVQHPNGATASGSYLPPKDDVVDDVQYRRGTDVGPPKVHSGSRFTEVARSGAPYSNASS
RGPPPSSNDISPDAYCLRHEITVSGGQVPPPLMSFETTGFPPQLLREVLSAGFSAPTPIQ
AQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFMHLQRIRNNSRMGPTILVLSPTRELATQ
IQDEAVKFGRSSRISSTCLYGGASKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQV
SYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNI
GNVDELVANKAITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNITR
QFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVINYDFPNGVED
YVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGADQRVPPQIREMAARGGGMNKF
SRWGPPGGRGGRGSGSGYGGRVSFGSRDSGMGSRSSNGWARDRDRSRSPERFNRVPPPSS
NGSPPRSFH
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcaaccgcttcttctgcagtccgttacgcacctgaggatcattctcttccg
aagccttggaagggccttgtggatgatcgtactggctacttgtacttttggaatcctgag
accaacgttactcagtatgacagacctgccacctcctccaagctctctcttagctcctcc
gttcaggttcaacatccaaatggtgctactgccagtggtagctatctccctcccaaggat
gatgttgttgatgatgttcagtaccgtagaggcactgacgttggacctcctaaggttcac
tctggctccaggtttactgaggttgccaggagtggagctccctattcgaatgcctcttca
agaggtcctcctccttcgtctaacgatatttcccccgacgcctattgcctccgtcatgaa
attactgtcagtgggggccaagtaccaccacctctaatgtcctttgaaactactggtttt
cctcctcagcttctgcgtgaggtactcagtgcaggtttctctgctccaactccaattcaa
gctcagtcctggcctattgcgatgcaaggtagggacatagttgccattgctaaaactggc
tcgggaaaaactttgggttacttgattcctggcttcatgcatcttcaacgcatccggaat
aattcgcgaatgggcccaacaatcttggtattgtctccaaccagggagctggccacacaa
atccaagacgaagctgttaaatttgggaggtcttcaagaatttcgtctacttgcttgtat
ggtggtgcatcaaaaggtcctcagctgagggatttagaaagaggagcagatatcgtggtt
gccactcctggacgattgaacgacatccttgagatgaggagaattagtctgcgccaagta
tcttatcttgtgctagatgaggctgatagaatgttggacatgggtttcgaaccgcagata
aggaagattgtgaaagagattcccactaagcgtcaaacccttatgtacacagctacatgg
ccaaagggagtcaggaaaattgcagctgacttgcttgttaaccctgcccaggtcaacatt
ggcaatgtcgacgaacttgtggctaacaaggcgatcacacagcacattgaagtggtagca
ccgatggagaaacagaggaggttagagcagatattgaggtctcaggaaccagggtcaaag
gttataatattctgctcaaccaaaagaatgtgtgaccaactaactcgcaatataacccga
caatttggagctgctgctatacatggagacaagtcccagcctgagagagacaatgttctg
aatcaattccgcagtggcaggactccggttcttgttgcaactgatgttgctgctcgtgga
ctggacgttaaggacattagggcggtcataaactatgatttccccaatggagtggaagac
tatgttcatagaatcggaagaacaggaagagctggagcgactggtcaggcattcacattc
tttggcgatcaagactcgaagcatgcttcggatctgataaagatcttggaaggagcagat
cagagagttcctcctcagatccgcgaaatggctgcacgtggtggtgggatgaacaaattc
agccgttggggtcctcctggaggtcgtggtggtcgtggcagtggctctggttatggtggc
agagttagcttcggttcacgtgacagtggaatgggaagcagaagcagtaatggatgggca
agagatcgtgataggagtcgtagcccggagagattcaacagagttccaccaccgtcttcc
aatggatctcctcctcgcagcttccactag
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