Raphanus sativus (radish): 108812434
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Entry
108812434 CDS
T06014
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108812434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108812434
03041 Spliceosome [BR:
rsz03041
]
108812434
03036 Chromosome and associated proteins [BR:
rsz03036
]
108812434
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108812434
Spliceosome [BR:
rsz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108812434
Complex B
108812434
Complex C
U2 SnRNP specific factors
108812434
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
108812434
TFTC complex
108812434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
108812434
NCBI-ProteinID:
XP_018440194
UniProt:
A0A6J0JZN7
LinkDB
All DBs
Position
6:complement(544513..548612)
Genome browser
AA seq
1215 aa
AA seq
DB search
MYLYSLTLQQATGITCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTGGQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMVGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTICYSVCGVDCGFDNPV
FAAIELDYSETDQDPTGQASSEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
ADGPSGVLVCAENFVIYKNQGHPDVRALIPRRDDLPAERGVLVVSAAMHKQKTTFFFLLQ
TEYGDVFKATLDHDGDHVSELKIKYFDTVPVAASICVLKLGFLFAASEFGNHGLYQFQAI
GDDPDVESSSSNLMETEDGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKILNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT
LVLSIGETVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
SIVKVGYNRLQVVIALSGGELIYFEADMTTGQLMEVGKHEMSGDVACLDIAPVPEGRQRS
RFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPASLF
LNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYI
HRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMFDRLGETFNETMVPLRYT
PRKFVVHPKKKLLVIVESDQGAFTAEEREAARKECFQAGGAGENGNGSADQMENGGDDED
KEDPLCDEQYGYPKAESEKWVSCIRVVDPKTADTTCLLELQDNEAAYSVCTVNFHDKEYG
TLLAVGTVKGMQFWPKKRQVAGFIHIYRFMEEGRKLELLHKTQVEGVPLALCQFQGRLLA
GIGPVLRLYDLGKKRLLRKCENKLFPNSIVSIQTYRDRIYVGDIQESFHYCKYRRDENQL
YIFADDCVPRWLTASHHVDFDTMAGADKFGNIYFVRLPQDVSEEIEEDPTGGKIKWEQGK
LNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFF
SHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPIDLQRKIADELDRTP
AEILKKLEDARNKII
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagcctaaccctacagcaggcgacgggaatcacctgcgcgataaacggc
aacttctccggcggaaagacgcaggagatcgccgtcgcccgcggcaagatcctcgatctc
ctccgccccgacgagaacggcaaaatccagacgatccactccgtcgaggtcttcggcgcg
atcagatccctagctcagttcaggctaaccggcggccagaaggactacatagtcgtggga
tccgactccggtaggatagtgattttagagtacaacaaggagaagaacgtgttcgacaaa
gtccaccaggagacgttcgggaagtccgggtgcaggaggatcgtccccgggcagtacctc
gcggttgatcccaaggggagggcggttatggttggggcgtgcgagaagcagaagcttgtt
tatgttttgaatagagatactgctgctaggttgactatttcgtctcccttggaggctcat
aagtctcatacgatttgttactctgtctgtggtgtggactgtgggtttgataatcctgtc
ttcgcggcgattgagcttgattactctgagacggatcaggatccgacggggcaggcgtct
agcgaggcgcagaagcatttgacgttctacgagcttgatttggggttgaatcatgtttct
aggaagtggtctgagccggttgataatggggctaacatgcttgtgactgtccccggagga
gctgatgggccgagtggggttttggtttgtgctgagaattttgttatttataagaaccag
gggcatccggatgtgagggctttgattcctaggagagatgatttgcctgctgagagaggg
gtgttggtggtttccgctgctatgcacaagcagaagactactttcttctttcttctacag
accgagtatggtgatgttttcaaggctacgcttgatcatgatggggatcatgtgtcggag
ttgaagatcaagtattttgacactgttcctgttgctgcgtcgatatgtgtgttgaagctg
gggtttcttttcgcggcttcggagtttggtaaccatggtttgtatcagtttcaggcgatt
ggggatgatcctgatgtggagtcttcttcctctaatctgatggagactgaagatgggttt
cagcctgtattttttcagccgaggagacttaagaaccttgttaggattgaccaagtggag
agtctgatgccgctcatggacatgaagatacttaacctttttgaggaagaaacacctcag
atcttttcgctctgtggacggggtccacggtcttctcttaggatactgaggcctggttta
gccatcagcgagatggccgtctctcagcttccgggtcagccaagtgcggtgtggacagtg
aagaagaatgtcagtgatgagtttgatgcgtatatcgttgtctccttcaccaatgctacc
ctggttctctcaattggtgaaacagtcgaggaagtcaacgacagtgggtttcttgatacc
accccttcactggccgtgtctctgattggtgatgattcgctcatgcaagtccatcccaat
ggtatccgccacataagggaagatgggcgtattaatgaatggagaactcctggcaagagg
tcgattgtcaaagttggatataatcggcttcaagtggtgattgcgttgagtggtggagag
ctaatttattttgaggcagatatgactactggtcagctgatggaggtggggaaacatgaa
atgtctggagatgtggcctgcctggacattgcccctgttcctgaaggaagacaaagatcc
cgcttccttgctgtgggatcctatgataacacagtgcgtattctgtctctggacccagat
gactgtctgcagattctcagcgtgcagagtgtctcttccgctccagagtctttgctgttc
ctcgaagttcaagcatcaattggtggggatgatggtgctgatcacccggctagcctcttc
cttaactctggtctgcagaacggtgttttgttcagaacagtggttgacatggtgactggt
cagctttctgattctcgttctcggttcttggggctgaagccacccaagttgttctccatt
tctgtgagaggtcggtctgcgatgctgtgtttgtctagtcgaccttggcttggttacata
catcggggacacttccacttgacgcctctctcttacgagactttggagtttgctgcccct
ttttcatctgatcagtgtgctgaaggtgttgtctctgtcgccggggatgctctcagaatc
ttcatgtttgatcgtcttggggaaacgttcaacgaaaccatggttcctctgaggtacacg
cccagaaagttcgttgtacatcccaagaagaagctgttggttatcgttgagagtgaccaa
ggggcatttaccgcagaagagcgtgaagcggcaagaaaggaatgcttccaggccggtgga
gcaggagaaaatggtaatggcagtgcagatcagatggagaatggtggggacgatgaggat
aaggaagacccactctgtgatgagcagtatggttatcccaaagccgagtcagaaaagtgg
gtctcttgcatcagagttgttgaccccaagacagccgatacaacttgtctactggaactc
caagacaacgaagctgcttacagtgtctgcacggtgaatttccatgataaagagtatggt
actttgctggctgttggcacagtcaaagggatgcagttctggcccaagaagagacaagtg
gctgggttcatacatatttataggtttatggaggaagggagaaaacttgagctgcttcat
aagactcaagtagaaggtgttcctcttgcattgtgccagttccagggaaggctgctggca
ggaatcggacctgtgcttagattgtatgacttggggaaaaagagactgcttaggaaatgt
gaaaacaagctcttcccaaactccatcgtctctatccaaacttaccgtgaccgtatttac
gttggtgacattcaggagtcattccattactgcaaatacaggcgcgacgagaatcagcta
tacatattcgccgatgactgtgtgccgagatggctgacagcatcgcaccatgtggatttc
gacaccatggcaggtgcagataagtttgggaacatctactttgtgaggctgcctcaggat
gtgtcggaggagattgaagaagacccgacaggcgggaagatcaagtgggagcaaggaaag
cttaatggagcgccaaacaaagtggacgagatcgtgcagttccatgtcggggacgttgtg
acctgcttgcagaaggcttcgatgattccaggtggatcagaatccattatgtatggaaca
gtgatgggcagcatcggagcattgcacgcattcacgtcccgtgatgatgttgattttttc
tctcatctggagatgcacatgaggcaggagtatcctcctctctgtggtagagaccatatg
gcttacagatctgcctattttccagtcaaggatgtgatagatggtgatctgtgcgagcag
tttccaacgcttccaatagatttgcagaggaaaatagcagatgagctggatagaacacct
gctgagattctcaagaagcttgaagatgctaggaacaagatcatttag
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