Raphanus sativus (radish): 108812435
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Entry
108812435 CDS
T06014
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108812435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108812435
03041 Spliceosome [BR:
rsz03041
]
108812435
03036 Chromosome and associated proteins [BR:
rsz03036
]
108812435
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108812435
Spliceosome [BR:
rsz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108812435
Complex B
108812435
Complex C
U2 SnRNP specific factors
108812435
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
108812435
TFTC complex
108812435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
108812435
NCBI-ProteinID:
XP_018440195
UniProt:
A0A6J0JWR8
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQQATGITCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTGGQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMVGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTICYSVCGVDCGFDNPV
FAAIELDYSETDQDPTGQASSEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
ADGPSGVLVCAENFVIYKNQGHPDVRALIPRRDDLPAERGVLVVSAAMHKQKTTFFFLLQ
TEYGDVFKATLDHDGDHVSELKIKYFDTVPVAASICVLKLGFLFAASEFGNHGLYQFQAI
GDDPDVESSSSNLMETEDGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKILNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT
LVLSIGETVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
SIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVGKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPASLFL
NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIH
RGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMFDRLGETFNETMVPLRYTP
RKFVVHPKKKLLVIVESDQGAFTAEEREAARKECFQAGGAGENGNGSADQMENGGDDEDK
EDPLCDEQYGYPKAESEKWVSCIRVVDPKTADTTCLLELQDNEAAYSVCTVNFHDKEYGT
LLAVGTVKGMQFWPKKRQVAGFIHIYRFMEEGRKLELLHKTQVEGVPLALCQFQGRLLAG
IGPVLRLYDLGKKRLLRKCENKLFPNSIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDCVPRWLTASHHVDFDTMAGADKFGNIYFVRLPQDVSEEIEEDPTGGKIKWEQGKL
NGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFS
HLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPIDLQRKIADELDRTPA
EILKKLEDARNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagcctaaccctacagcaggcgacgggaatcacctgcgcgataaacggc
aacttctccggcggaaagacgcaggagatcgccgtcgcccgcggcaagatcctcgatctc
ctccgccccgacgagaacggcaaaatccagacgatccactccgtggaggtcttcggcgcg
atcagatccctagctcagttcaggctaaccggcggccagaaggactacatcgtcgtggga
tccgattccggtaggatagtgatcttagagtacaataaagagaagaacgtcttcgacaaa
gtccaccaggagacgttcgggaagtccgggtgtaggaggatcgtccccgggcagtacctt
gcggttgatcccaaggggagggcggttatggttggtgcctgtgagaagcagaagcttgtg
tatgttttgaatagggatactgctgctaggttaactatttcgtctccgttagaggctcat
aagtctcatacgatttgttactctgtgtgtggtgtggactgtgggtttgataatcctgtt
ttcgcggcgattgagcttgattactctgagacggatcaggatccgacggggcaggcgtct
agcgaggcgcagaagcatttgacgttctatgagcttgatttagggttgaatcatgtttct
aggaagtggtctgagccggttgataatggagctaacatgcttgtgactgtccccggaggg
gctgatgggccgagtggggttttggtttgtgctgagaattttgttatttataagaatcag
gggcatccggatgtgagggctttgattcctaggagagatgatttgcctgctgagagaggg
gtgttggtggtttccgctgctatgcacaagcagaagactactttcttctttcttctccag
acggagtatggtgatgttttcaaggctacgcttgatcatgatggggatcatgtgtcggag
ttgaagatcaagtattttgacactgttcctgttgctgcgtcgatatgtgtgttgaagctg
gggtttcttttcgcggcttcggagtttggtaaccatggtttgtatcagtttcaggcgatt
ggggatgatcctgatgtggagtcttcttcctctaatctgatggagactgaggatggtttt
cagcctgtgtttttccagccgaggagacttaagaaccttgttaggattgaccaagtggag
agtctgatgccgctcatggacatgaagatccttaacctttttgaggaagaaacccctcag
atcttttcgctctgtggacggggtccacggtcttccctaaggatactgaggcctggttta
gccatcagcgagatggctgtctcccagcttccgggtcagccaagtgcggtgtggacagtg
aagaagaatgtcagtgatgagtttgatgcttatatcgttgtctccttcaccaatgctact
ctggttctttcaattggtgaaaccgtcgaagaagtcaacgacagtgggtttcttgatacc
accccttcactcgccgtgtctctgattggtgatgattcgctcatgcaagtccatcctaat
ggtatccgccacataagggaagatgggcgtattaatgaatggagaactcctggcaagagg
tcgattgtcaaagttggatataatcggctacaagtggtgattgcgttgagtggtggagag
ctaatttattttgaggcagatatgactggtcagctgatggaggtggggaaacatgaaatg
tctggagatgtggcctgcctggacattgcccctgttcctgaaggaagacaaagatcccgc
ttccttgctgtgggatcctatgataacacagtgcgtattctgtctctggacccagatgac
tgtctgcagattctcagcgtgcagagtgtctcttccgctccagagtctttgctgttcctc
gaagttcaagcatcaattggtggggatgatggtgctgatcacccggctagcctcttcctt
aactctggtctgcagaatggtgttttgttcagaacagtggttgacatggtgactggtcag
ctttctgattctcgttctcggttcttggggctgaagccacccaagttgttctccatttct
gtgagaggtcggtctgcgatgctgtgtttgtctagtcgaccttggcttggttacatacat
cggggacacttccacttgacgcctctttcttacgagactttggaatttgctgcccctttt
tcatctgatcagtgtgctgaaggtgttgtctctgtcgccggggatgctctcagaatcttc
atgtttgatcgtcttggggaaacgttcaacgaaaccatggttcctctgaggtacacgccc
agaaagttcgttgtacatcccaagaagaagctgttggttatcgttgagagtgaccaaggg
gcatttaccgcagaagagcgtgaagcggcaagaaaggaatgcttccaggccggtggagca
ggagaaaatggtaatggcagtgcagatcagatggagaatggtggggacgatgaggataag
gaagacccactctgtgatgagcagtatggttatcccaaagccgagtcagaaaagtgggtc
tcttgcatcagagttgttgaccccaagacagccgatacaacttgtctactggaactccaa
gacaacgaagctgcttacagtgtctgcacggtgaatttccatgataaagagtatggtact
ttgctggctgttggtacagtcaaagggatgcagttctggcccaagaaaagacaagtggct
gggttcatacatatctataggtttatggaggaagggaggaaacttgagctgcttcacaag
actcaagtagaaggtgttcctcttgcattgtgccagttccagggaaggctgctggcagga
atcggacctgtgcttagattgtatgacttggggaaaaagagactgcttaggaaatgtgaa
aacaagctcttcccaaactccatcgtctctatccaaacttaccgtgaccgtatctacgtt
ggtgacattcaggagtcattccattactgcaagtacaggcgcgatgagaatcagctatac
atattcgccgatgactgcgtgccgagatggctgacagcatcgcaccatgtggatttcgac
accatggcaggcgcagataagtttgggaacatctactttgtgaggctgcctcaggatgtg
tcggaggagattgaagaagacccgacaggcgggaagatcaagtgggagcaaggaaagctt
aatggagcgccaaacaaagtggacgagattgtgcagttccatgtcggggacgttgtgacc
tgcttgcagaaggcttcgatgattccaggtggatcggaatccattatgtatggaacagtg
atgggcagcatcggagcattgcacgcattcacgtcccgtgatgatgttgattttttctct
catctggagatgcacatgaggcaggagtatcctcctctctgtggtagagaccatatggct
tacagatctgcctattttccagtcaaggatgtgatagatggagatctgtgcgagcagttt
ccaacacttccaatagatttgcagaggaaaatagcagatgagctggatagaacacctgct
gaaattctcaagaagcttgaagatgctaggaacaagatcatttag
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integrated database retrieval system
