Raphanus sativus (radish): 108812666
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Entry
108812666 CDS
T06014
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108812666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108812666
03110 Chaperones and folding catalysts [BR:
rsz03110
]
108812666
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108812666
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108812666
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108812666
Messenger RNA biogenesis [BR:
rsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108812666
Chaperones and folding catalysts [BR:
rsz03110
]
Heat shock proteins
HSP60 / Chaperonin
108812666
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108812666
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108812666
Exosomal proteins of other body fluids (saliva and urine)
108812666
Exosomal proteins of breast cancer cells
108812666
Exosomal proteins of colorectal cancer cells
108812666
Exosomal proteins of bladder cancer cells
108812666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Ribosomal_L29
Motif
Other DBs
NCBI-GeneID:
108812666
NCBI-ProteinID:
XP_018440493
UniProt:
A0A6J0LTX1
LinkDB
All DBs
Position
6:45760936..45763431
Genome browser
AA seq
585 aa
AA seq
DB search
MATANALTSASVLCSPRQGKLSGGSQQKGQRVSYRKANRRFSVRANVKEIAFDQSSRAAL
QAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREV
ASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELEKRARP
VKGGSDIRAVATISAGNDELVGAMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDR
GYISPQFVTNPEKLLVEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTGE
ALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYQALDMGLLVENTTIDQL
GIARKVTISKDSTTLIADAASKDELQARISQLKKELFETDSVYDSEKLAERIAKLSGGVA
VIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDAD
ERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVID
PAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAAAAAAPEGLMV
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcaaacgctctcacttccgcctctgtcctctgctccccacgacagggaaag
ctgagtggtggaagtcagcagaaaggtcaaagagtaagctacaggaaagcaaacagacgt
ttcagcgttagagctaacgtcaaggagattgctttcgaccagagctccagagctgctctt
caagctggtatcgacaagcttgctgatgctgttggtctcactcttggccctagagggagg
aatgttgtgttggatgagtttggaagtcccaaggttgtgaacgatggagtcaccattgct
agggctatcgagttacctgacgccatggagaatgctggtgctgcacttatccgtgaggtt
gcgagtaagactaatgactccgctggtgatggaacaaccactgcctctgtcctggctcgt
gaaatcatcaaacacggattgttgagcgtcacttctggcgccaatcccgtctccctcaag
cgaggaatcgacaagactgttcaaggtttgatcgaagagctcgagaagagagctagaccc
gtcaaaggcggtagcgacatcagagccgtggctacaatctcagctggaaacgacgagctt
gtgggagcgatgatcgctgacgccatcgacaaagttggacctgacggtgttctgtccatc
gagtcttcgtcctctttcgagaccaccgtcgaagtcgaagaagggatggagattgacaga
ggctacatctcgcctcagttcgttacaaaccccgagaagctgctggttgagttcgagaac
gcgagagtgttgatcactgatcagaagatcactgccatcaaagacatcatcccaatcttg
gagaagaccactcagcttcgtgctccgctgctgatcatcgcagaggatgttacaggggag
gccttagcaactctcgttgttaacaaactccgcggtgttctcaacgttgttgccgtgaaa
gctccagggtttggagaaaggaggaaagctatgcttcaagatatcgcaatcttgacagga
gctgagtaccaagcccttgacatgggcctgctggtggaaaacacaaccatagatcagttg
ggtattgcacgtaaagtgaccataagcaaagactcgactacgctgatcgcagatgcggct
tccaaggacgagttgcaagctcgtatctcccagctgaagaaggaactgttcgagactgac
tctgtgtacgactcggagaagctcgctgagagaatagccaaactctctggtggtgttgcc
gtcattaaagtcggagcagcgactgaaaccgagctggaggaccgtaagcttcgtatcgag
gacgcgaagaacgctacctttgctgctatcgaggaagggatagtccccggtggtggtgcg
actctggtgcatctctccactgttatccctgccattaaggagacgtttgaggacgctgat
gaacgtcttggagctgatatagtacagaaggcattggtggcaccagcagcacttattgcg
cagaacgctgggattgaaggagaagttgtggtggagaagattatgttcagtgaatgggag
ctagggtacaacgccatgactgatacctatgagaatctgttggaagctggagtgattgat
ccggctaaagtgaccagatgtgcgcttcagaacgctgcttcggttgcagggatggtgctg
accactcaggctatcgttgttgataagcctaaacctaaggctgctgctgctgctgcacct
gagggcctcatggtgtaa
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