Raphanus sativus (radish): 108812690
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Entry
108812690 CDS
T06014
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108812690
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108812690
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108812690
NCBI-ProteinID:
XP_018440522
UniProt:
A0A6J0JXT8
LinkDB
All DBs
Position
Unknown
AA seq
417 aa
AA seq
DB search
MAITKVLVLFASALLLSMLFAGVDSTRSNETWHEHAVENPDEVAAMVDMSIRNSTVRRRL
GYFSCSTGNPIDDCWRCDRKWQFRRKHLAICAIGFGRNAIGGRDGRYYVVSDPNDDNPVN
PKPGTLRHAVIQEEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQYV
TNIIIHGIHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSTCADG
LIDAVMGSTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGRGLIQRMPRCR
HGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGHWQWKHWN
WRSEGDLFLNGAFFTRSGSGRGASYARASSLAAKSSSLVGVLTSNAGALNCRGGRRC
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggctatcacgaaagtacttgtcctctttgcttctgcattactcctatcaatgcttttt
gctggtgtcgattccaccaggtccaatgaaacatggcatgaacatgcagttgagaatcca
gacgaagtagctgccatggtggacatgagcattcgtaacagtaccgtgcggagaaggtta
ggttacttctcatgctccaccggtaacccaatcgacgattgctggcgttgtgaccggaaa
tggcaattccggcgaaaacacctcgccatctgcgcaatcggtttcggacgcaacgcaata
ggcggcagagacggacgctactacgtcgtgagcgaccctaacgacgataacccggttaac
cctaaaccgggcacactccgtcacgccgtgatccaagaagagcctctctggatcgtattc
aaacgcgacatggtcataacgctgaagcaagaactcatcatgaacagcttcaagacgata
gatggccgtggcgtcaacgtacacatagctaatggtgcatgcatcaccatacagtacgtg
acgaacattatcatacatgggatacatattcatgactgtaaacctactggtaacgctatg
gtgaggagctctccgtcgcattatgggtggaggacgatggctgacggtgatgggatctcg
atctttgggtcgagtcatatttggattgatcacaactcgctctctacttgcgctgatggg
cttattgatgctgttatgggttccactgccattactatctctaacaattactttacgcac
cataacgaggttatgttgttgggacatagtgatacttacacaagggacaaggtgatgcag
gttacgattgcttataaccattttggtagaggtcttattcagaggatgccaaggtgtagg
catggatacttccatgtagtgaacaatgactacacacactgggagatgtatgcaattggt
ggtagtgcgagtcccaccatcaacagccaaggaaacagatatcttgcaccgagaaaccgg
tttgctaaagaggtgacaaagagagactatgcagggcactggcaatggaagcattggaac
tggagatcagaaggagaccttttcctaaacggtgctttcttcacacgttctggatcaggg
cgtggagccagctacgctagagcttcaagtttggcagccaaatcgtcatcccttgttggc
gtccttacctctaatgctggtgctcttaattgcagaggtggtcgccggtgttaa
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