Raphanus sativus (radish): 108812721
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Entry
108812721 CDS
T06014
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108812721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108812721
03009 Ribosome biogenesis [BR:
rsz03009
]
108812721
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108812721
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
108812721
Pre-60S particles
108812721
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
IBN_N
TPR_IPO5
TPR_IMB1
HEAT_2
HEAT_MROH2B_C
TPR_DNAAF5
Cnd1
TOR1L1_N
HEAT_EF3_N
Vac14_Fab1_bd
HEAT_Maestro
PDS5
Ltn1_1st
MMS19_C
Motif
Other DBs
NCBI-GeneID:
108812721
NCBI-ProteinID:
XP_018440557
UniProt:
A0A6J0JXZ4
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All DBs
Position
6:complement(26604153..26610560)
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AA seq
898 aa
AA seq
DB search
MAATTVWQPREDGLAEIFTLLEQQISPSSVADKSQIWKQLEHFSQFPDFNNYLVFILVRA
EGKSIGLRQAAGLLLKNNLKRVWISMVQENQKYIKSELLPCLGAVDRHIRTTVGTIISEI
VNVEGVAGWLELLPALVSCLDSNDLNHMDGAMDALSKICEDIPQVLDSEVPGLAQRPINI
FLPRLYQFFQSPHASLRKLALGCVNQYVIIMPAALYNSMDKYLQGLFVLANDPVAEVRKL
VCAAFVHLTEVLPSSIEPHLRNVMEYMLQVNKDPDEEVALEACEFWSAYCDAQLPTENLK
EFLPRLIPVLLSNMAYADNDESLLEAEEDESQPDRDQDLKPRFHTSRLHGSEDFDDDDDD
SFNVWNLRKCSAAAIDVLSNVFGDEILPALMPLIQAKLSASGDEAWKEREAAVLTLGAIA
EGCFNGLYPLLSEIVAFLLPLLDDKFPLIRSISCWTLSRFGKYLIQEIGNPKGYEQFEKV
LMGLLRRLLDSNKRVQEAACSAFATVEEDAAEELVPHMQVILQHLMCAFGKYQRRNLRIV
YDAIGTLADSVREDLNKAYSIFFLMQPAYLEILMPPLVAKWQQLSNSDKDLFPLLECFTS
ISQALGVGFAPFAQPIFQRCMDIIQLQHLAKVDPASAGAQYDREFIVCSLDLLSGLTEGL
GSGIESLVSPSNLRDLLLKCCMDEASDVRQSAFALMGDLARVFPAYLQPRMVEFLEIASQ
QLSANLIRENLSVANNACWAIGELAVKVRQEVSPIVTNVVSSLGLILQHGEAVNKSLVEN
SAITLGRLAWIRPDLVAPHMEHFMKPWCLALSTVRDDIEKEDAFRGLCAVVKVNPSGGVS
SLVFICIAIASWHEIRSEDVKNEVSQVLNGYKQLLGNSWAECLSALEPPVKERLARYV
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacgactgtgtggcagccccgagaagatggcctcgctgagatcttcactctc
ctcgaacaacagatttctccttcctccgttgctgacaagtctcagatttggaagcagctc
gagcacttctctcagttccctgatttcaataactatctcgtcttcatcctcgtccgcgct
gagggtaagtccatagggcttcgtcaagctgctggattgctgctgaaaaacaatttgaag
cgtgtatggatatctatggttcaagaaaaccaaaaatacatcaaatcggagctgctgcct
tgtctaggagctgtggacagacatattaggacaactgttggaaccatcatcagtgaaatt
gttaatgtagagggggttgctggatggctcgagcttttgccagctcttgtcagttgttta
gacagtaatgatctgaatcacatggatggtgcaatggatgcattgtcaaagatttgtgag
gatatccctcaagtattggattcagaagtgcctggtttagcacaacgccctatcaacatt
ttcttgcctaggctatatcagtttttccagtctccccatgcttcactgaggaagcttgcc
ttgggttgtgtgaaccaatatgtcatcataatgcctgctgctttgtataattctatggat
aagtaccttcaggggttgtttgtccttgccaatgatcctgtagcagaagtcagaaaatta
gtctgcgcagcatttgtgcatctgacggaagtcctcccctcgtcaatagagccacatctc
aggaatgtaatggaatacatgctacaagtcaacaaagaccctgatgaagaagttgctctt
gaagcatgtgaattctggtctgcatactgtgatgcgcagctaccgacagagaacttaaaa
gagtttctgccacgccttattccagtgttgctctcaaacatggcttatgccgataacgac
gagtcgcttttggaggctgaggaagatgagtctcaaccagacagagatcaggatttgaaa
cctcgtttccatacatcaagacttcatggatcagaggattttgatgacgatgatgatgac
tcgttcaacgtgtggaatttaagaaagtgcagtgcagcagctattgacgttctctctaat
gtatttggagatgaaatccttccagcactcatgccccttattcaggcaaaattatcagct
tctggtgatgaggcctggaaagaaagagaggctgctgttttgaccctcggggctattgct
gaaggctgctttaatggtctttaccctctcttgtccgagatcgtagcttttcttcttccg
cttttagatgataaattccctctcataagaagcatatcttgctggacgctttctcgattt
ggaaagtatctcatccaggaaattggcaatccaaagggttacgagcagtttgagaaagtt
cttatgggtcttctccgcagactcttggattcgaacaagcgggtccaggaggctgcatgt
tcagcttttgcaactgttgaagaggatgctgctgaagagttagtcccacacatgcaagta
atactgcagcatctaatgtgcgcctttggaaagtatcagaggaggaacttaagaattgtc
tatgatgctattggaacactggcagattcggttagagaagatttgaacaaggcctactct
atattcttccttatgcagccggcttatcttgagatcctgatgcctccactggtcgcaaag
tggcaacaactttcaaactcagacaaagatctatttccattgctggaatgcttcacatct
atttctcaggctttaggtgtgggattcgctccatttgctcagcctattttccagagatgc
atggatatcatccaactacaacacctcgctaaggttgatcctgcttctgctggggcccag
tacgacagagaattcattgtttgttctcttgatttgctttctgggcttactgaagggctt
ggtagtgggatagagtctctggtttcaccaagtaatctcagggatctgcttctcaaatgt
tgcatggatgaggcttctgatgtcagacaaagtgcttttgctcttatgggtgatcttgca
agagtattcccagcttacctacaaccccgcatggttgagttccttgaaattgcaagtcag
caactgagcgcaaacctcattagagaaaacctttctgtcgccaataatgcttgttgggcc
attggagaattagcggtcaaggttcgtcaagaagtctcaccgattgtgaccaacgttgtc
tcttccctaggcctaattcttcagcatggagaggctgtcaataagtcactagtcgaaaac
agtgcaattaccctcgggagactagcatggattcgtccagacctcgtcgcacctcacatg
gagcacttcatgaagccatggtgcttggcattgtcaacggtacgtgatgacattgagaaa
gaagatgcatttagagggttatgtgcagtggttaaagtgaatccatcaggaggtgtcagc
tcacttgttttcatatgcatagccattgcaagctggcatgaaataagaagcgaggacgtc
aaaaacgaagtctcccaagtgctgaacggctataaacagttgctgggaaactcatgggcg
gaatgtttgtctgctttggaacctcctgttaaagaaaggcttgcgagatacgtttga
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