Raphanus sativus (radish): 108812813
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Entry
108812813 CDS
T06014
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108812813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108812813
03036 Chromosome and associated proteins [BR:
rsz03036
]
108812813
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108812813
Coactivators
SAGA/TFTC/STAGA complex
108812813
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108812813
STAGA complex
108812813
TFTC complex
108812813
SAGA complex
108812813
SLIK complex
108812813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CBFD_NFYB_HMF
TFIID-31kDa
MMS19_C
Motif
Other DBs
NCBI-GeneID:
108812813
NCBI-ProteinID:
XP_018440686
UniProt:
A0A6J0JZU3
LinkDB
All DBs
Position
1:complement(2348902..2353255)
Genome browser
AA seq
520 aa
AA seq
DB search
MSIVPKETIEVIAQSIGITNLSPEAALMLAPDVEYRVREIMQEAIKCMRHSKRTTLTASD
VDGALNLRNLEPIYGFASGGPIRFRKAIGHRDLFYTDDREVDFKDVIEAPLPKAPLDTDI
VCHWLAIEGVQPAIPENAPLEVIRAPAENQIYQQKDGPLIDIRLPVKHVLSKELQLYFQK
IAELTMSKSNPSLFKEALVSLASDSGLHPLVPYFTNFIADEVSRGLNDFLLLSNLMHVVR
SLLQNPHIHIEPYLHQLMPSVVTCLVSRKLGNRFADNHWELRDFTANLVALICKRFGNTY
ITLQSRLTKTLVNALLDPKKALTQHYGAIQGLAALGHNVVRLLVLPNLEPYLSLLEPELD
AEKQKNQMKSYETWRVYGALLRAAGLCIHDRLKIFPYLPSPSPSFLNKGKGKIINTEPNK
RKLSVDSSSTMQVDKPMGDDNPPQNSVQPSSSGQASDGAPESRNAKEKEGSKGRAITMKA
ILDQVWKNDLDSGRLLVKLHQLYGDRILPFIPSTEMSLFL
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgtacctaaggaaacgattgaggttatagcacaaagcattgggattaccaac
ttgtcacctgaggctgcacttatgcttgctcctgatgttgagtatcgtgttcgagagatc
atgcaggaagcgatcaaatgcatgcgtcactcgaagagaacgactttaacagcttctgat
gttgatggtgctctcaacttaaggaaccttgagcccatatatggctttgcctcaggagga
ccaattcgttttagaaaagctattgggcatcgggatttgttctacactgatgacagagag
gtggatttcaaagatgtgattgaagctccactaccaaaagctcctcttgatactgatatt
gtctgccactggcttgcgattgaaggagtgcagccagctataccagaaaacgctcctttg
gaagtcattagggcacctgcagaaaatcaaatctatcaacaaaaggacggacctcttatt
gacattaggctaccagtgaagcatgtattatctaaggagcttcagctatacttccaaaag
attgctgaacttacaatgagcaagtcaaatccttctctgttcaaagaggcattagtgagc
ttggcctcagactcgggacttcatcccctagttccatattttacaaatttcattgctgat
gaggtatcacgtggtttaaatgacttcctactcctgtccaatttaatgcacgttgtcaga
agtcttttgcagaatcctcatatacacatagaaccttatctccaccagttgatgccctct
gttgtaacatgtcttgtatcgagaaagcttggaaacagatttgccgacaaccattgggaa
cttagagattttactgcgaatctggttgcactgatatgtaaaaggtttggaaacacttac
attactctccagtctcgtcttacgaaaactttagtcaatgcacttttggacccaaagaag
gctttgactcagcactacggtgcaattcaaggattagcggccttggggcacaatgtcgta
cgccttcttgttctgccaaatcttgaaccgtatctgagtcttctcgaaccagaattggat
gctgagaagcaaaagaaccagatgaagagctacgaaacttggcgtgtgtatggagcttta
ctgcgtgctgcaggcctgtgtatacatgaccggcttaaaatcttcccatatttaccatct
ccttcaccaagctttctcaataagggaaaggggaaaataatcaatactgagccaaataag
cgaaagctgagtgtagattcttcatccactatgcaagtagataaaccaatgggagatgac
aatcctccacaaaactctgttcaaccatcctcatcaggacaagcttctgatggtgcacct
gaaagcagaaacgcaaaggagaaagaaggcagcaagggccgggctatcaccatgaaagca
atccttgatcaggtctggaaaaatgacctcgattctggaaggctcttggtgaaactgcac
caactctatggtgataggatccttcctttcatcccttctacagagatgtcattattcctc
taa
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