Raphanus sativus (radish): 108812827
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Entry
108812827 CDS
T06014
Name
(RefSeq) U-box domain-containing protein 13
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108812827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108812827
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108812827
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
U-box type E3
108812827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
zf-Nse
Arm_2
KAP
zf-RING_UBOX
Neurochondrin
MCAfunc
zf-C3HC4_4
MLKL_N
zf-C3HC4_2
zf-C3HC4
RPW8
zf-NOSIP
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
108812827
NCBI-ProteinID:
XP_018440697
UniProt:
A0A6J0JYE5
LinkDB
All DBs
Position
6:41322124..41325020
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AA seq
671 aa
AA seq
DB search
MEEEKAAVSVTVTVVAQSLIDVVNEIASVSDYRTTVKKLCSNLARRLKLLVPMFEEIRES
NDLIMSEDTLGTLVSLREALSSAKDHLKFCSGGSKIYLVMEKEQVTSKLLEVSVQLEQSL
SKIPFEDLDISDEVKEQVELVLSQFRRAKGRVDASDDELYQDLQSLCTKSSDVDDDYQVA
LQRVAKKLQLMEIPDLAQESVALHEMVALSGGGDAEEMTMVLKRIKDFVQMESDNNSEDQ
KVGVINSSSSNGQTSTAVSQKIPVVPDDFRCPISLEMMRDPVIVSTGQTYERTCIEKWIE
AGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSFRPRKVSSFSSPAEA
NKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLATPDSRIQ
EHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVT
IGVLGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVVPTLTRLLTEPGS
GMVDEALAILAILSSHPEGKAIIGSLDAVPSLVEFIRTGSPRNRENAAAVLVHLSSGDNP
QHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRLAEQQKETAVQEQTKEEDEPT
HSTSTTEAAAT
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagaaagctgccgtttccgtcaccgtcaccgtcgtcgcgcagagcttaatc
gatgtggtgaacgagattgcgtctgtttccgattaccgcacgacggtgaagaagctatgc
agcaacctagctaggaggttgaagctgcttgttccgatgttcgaggagatcagagagagc
aacgatctcatcatgagtgaagatacactggggacgttggtctccttgagagaagccttg
tcctcggccaaggatcatctcaagttctgcagcggagggagcaagatctatctggtgatg
gagaaggaacaagtgacgagtaagttgctggaggtttcagttcagcttgaacaatcttta
agtaagattccttttgaggatcttgacatatctgatgaagttaaagaacaggttgagctg
gttctgagtcagtttcggcgagcgaaaggaagagtagatgcatcagacgatgaactatat
caagaccttcagtcactgtgtaccaaaagcagcgatgtggatgatgattatcaggttgcg
ctgcagcgggttgcgaagaagttacagctcatggagattcctgacctagctcaagaatca
gtggctctgcacgaaatggttgctttgagcggtgggggagacgctgaggagatgacaatg
gtgctgaagcggattaaggattttgtgcagatggagagtgacaacaacagcgaggaccag
aaagtaggtgtcatcaactcgagtagtagcaatggacaaacttccacggctgtgagtcag
aagatacccgtggttcccgatgattttcgctgtccgatatctctggagatgatgagagat
ccagttattgtttcaacagggcagacctatgaacgcacctgcattgagaagtggatagaa
gctgggcattcgacatgtccaaaaacacagcaagcgctgacaagcacaaccctcacacct
aactatgtcctccgtagtctcatagctcagtggtgcgaggccaatgatattgagcctcca
aaacctcccagcagttttaggccccggaaagtatcctccttctcctccccagcagaagcc
aacaagatcgaagatcttatgtggagactggcttacggaaacccagaggaccagagatcc
gcagctggggagatccgcctcctcgcgaaacgaaacgcagacaaccgtgtggccatagcc
gaagctggagccatacctcttctcgttggcctcctcgcaactcctgattctcgtatccaa
gaacattccgtgacagctcttctaaacctctccatatgtgagaacaacaagggagccatt
gtctctgctggagccatccctgggatagttcaagtgctcaagaaaggaagcatggaggct
agagagaatgctgctgctaccctcttcagtctctcggtgattgacgaaaacaaagtgacc
atcggtgtcttgggagcgatcccgccgctcgtcgtgctgcttaatgaaggcacgcagaga
ggaaagaaagacgctgctactgcacttttcaacctctgcatttaccaaggaaacaaagga
aaagccatacgagcaggagtggttcccaccttgactagactcttaacagagcccgggagc
gggatggtcgacgaggcgctggcgattctggccattctctcgagccatcccgaagggaaa
gcgatcatagggtcattggacgcagtcccgagcctggtggagtttatcaggactggttcg
cctagaaacagagagaacgcagctgcggttctagttcacctcagttctggtgacaaccca
caacatctggtggaagctcagaaactcggacttatgggtccattgatagatttagcagga
aacggaacagatagagggaaaagaaaagcagctcagttgcttgaacgtataagccgtcta
gctgaacagcagaaggagacggctgttcaggaacaaactaaagaagaagatgaaccaaca
cattcaacatccaccacagaagctgctgcgacttga
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