Raphanus sativus (radish): 108813019
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Entry
108813019 CDS
T06014
Name
(RefSeq) phosphomethylpyrimidine synthase, chloroplastic
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00730
Thiamine metabolism
rsz01100
Metabolic pathways
rsz01240
Biosynthesis of cofactors
Module
rsz_M00897
Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
108813019
Enzymes [BR:
rsz01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
108813019
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GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-GeneID:
108813019
NCBI-ProteinID:
XP_056845037
UniProt:
A0A9W3C0J6
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Position
6:46527348..46531173
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AA seq
648 aa
AA seq
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MSSVHSSTLMSVVCNSNNNNKNHSAWPKLPNSSLLPGFDVVVQTAGVRFKKDTTATRATL
TFDPPTTNSERAKQRKHTVDPSSPDFQPIPSFEECFPKSTKEHMEVVHEESGHVLKVPFR
RVLLSGGEPAFDNYDTSGPQNVNPQIGLAKLRKEWIDRREKQGAPRYTQMYYAKQGIITE
EMLYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVAS
SIEEEVYKVQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA
ENLTWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYH
KENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKD
VQVMNEGPGHVPMNKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGA
LGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKQHPHAQAWDDALSKARFEF
RWMDQFALSLDPMTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAEENGYG
TAEEALRKGMEAMSQEFNVAKKTISGEQHGEVGGEIYLPESYVKAAKK
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagtacacagtagtactttgatgtctgtcgtatgcaacagcaacaacaacaac
aagaaccactccgcctggccaaaacttccaaactcctccttactacctggattcgatgtg
gttgtccaaaccgctggcgttcggttcaagaaagacacaacagccacacgtgccacgctg
acgtttgatccaccaacgacaaactcagagagagccaagcagagaaaacacaccgtcgac
ccttcttctcctgattttcaaccaatcccatctttcgaagaatgcttccctaagagcact
aaagaacacatggaggttgttcatgaggaatctggtcatgtcctcaaagttcctttcaga
cgtgttcttctgtctggtggtgagccagcttttgataactacgacactagcggccctcaa
aatgtcaacccacaaattgggcttgctaagctaaggaaggagtggatcgaccgtcgcgag
aagcaaggagcaccaaggtacactcaaatgtactacgcaaagcaagggatcataaccgag
gagatgctctactgcgccaccagagagaagctcgaccccgagttcgtgagatcagaagtt
gcgcgtggtagagccatcatcccttccaacaagaagcacctggagctcgaaccgatgata
gtcggtcgaaagttcttggtcaaagtcaacgccaacatcggaaactcggccgttgcgagc
tccatcgaagaagaagtctacaaggttcagtgggcgaccatgtggggagctgacacgatc
atggacctctccacaggtcgtcacatccacgagacgcgcgagtggatcctgaggaactcg
gctgtccccgtcggcaccgtccccatctaccaagcccttgagaaagttgacggtattgct
gagaatcttacgtgggaagtgttcagagagactctcatcgaacaggccgagcaaggtgtg
gattacttcactatccacgctggtgttcttctgcgttacattcctctaacggccaagcgt
atgactggaatcgtttctcgtggaggatcaatccatgccaagtggtgcttagcttaccac
aaggagaactttgcgtacgagcactgggatgatattcttgacatatgtaaccagtatgac
gtggctctttccattggggatggtctgagacctggctccatctatgatgctaacgacact
gctcagtttgctgagcttcttactcaaggtgaactaacacgccgagcatgggagaaagat
gtgcaggtgatgaacgaagggccagggcatgtgccgatgaacaagatcccggagaatatg
cagaagcagcttgaatggtgtaacgaggcgccgttctacacgcttggtcctttgactacc
gatatagctcctgggtatgatcacatcacctctgccattggagctgccaatatcggagcc
ttgggcacagctcttctctgctatgtaacgcctaaagagcatctcgggttaccgaacaga
gacgatgtgaaggctggggttatagcttacaagatagccgcacatgcagctgatctagcc
aagcagcatccgcatgcgcaggcgtgggacgatgcgctgagcaaggcccggtttgagttt
aggtggatggatcagtttgctctgtcgttggaccctatgaccgcgatgtcgttccatgat
gagacgcttccggctgatggagccaaggttgcgcacttctgctccatgtgtggaccaaaa
ttctgctccatgaagataactgaagacatcaggaagtatgcggaggagaatggttatggc
actgctgaggaagcgctcagaaaagggatggaggctatgagccaagagttcaatgttgcg
aagaaaaccatcagcggagagcagcacggtgaagttggtggtgaaatctacttgccagag
agctatgtcaaggctgctaagaagtaa
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