Raphanus sativus (radish): 108813021 Help Entry 108813021         CDS       T06014                                  Name (RefSeq) protein SUPPRESSOR OF PHYA-105 1   KO K16240   protein suppressor of PHYA-105 1 and protein SPA1-related 2 Organism rsz  Raphanus sativus (radish) Pathway rsz04712   Circadian rhythm - plant Brite KEGG Orthology (KO) [BR:rsz00001]  09150 Organismal Systems   09159 Environmental adaptation    04712 Circadian rhythm - plant     108813021  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:rsz04121]     108813021 Ubiquitin system [BR:rsz04121]  Ubiquitin ligases (E3)   Multi subunit type E3    Multi subunit type E3 associated proteins     108813021 SSDB OrthologParalogGFIT Motif Pfam:  Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_C EIF3I WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_WDR36-Utp21_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Pkinase Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ASA1 Beta-prop_HPS5 Beta-prop_NOL10_N Beta-prop_WDR35_TULP_N Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR41 Beta-prop_NUP159_NUP214 WD40_RFWD3 PK_Tyr_Ser-Thr WD40_like Y4lR_2nd Motif Other DBs NCBI-GeneID:  108813021 NCBI-ProteinID:  XP_018440946 UniProt:  A0A6J0K0J6 LinkDB All DBs Position 6:complement(52901067..52906203) Genome browser AA seq 1053 aa AA seqDB search MNAMERVGGEERVGSNKNVELKGGRVDNDVPCTMVTTDSEPGRSDCPGSSAPPPHRNLLV DINNKPPPEESPGAKISVEELTYRAAVQGSSHNHNHNHNHNHMESSRAAGKFEHLYRLGS SAAFRGGGDGGDVDSQPRDMDQMLSRIRQQLAGAPSERQNLKPFVNKRSDQNLEAFSERL RAAGGENGVMNGPGWINDGVQSKTPLSSSSFSQLILKRAMKGKGVVGKHQEAPPPPPPPE FVCDQDGVCKDKKLDNSSSKSPLVAHDPSLPLKPIPKGHNGIVSNGEGNHTISSSSCGIS LREFIRSSYGKREKRHSLSLFRQLVELIGSAHSQGLFLLELRPSLFALVPSKKLRYNGTF GKSSIESDVDEDFNRKRHVIQESSTGGRGLKKRRMDLNAPGNQLQATSSGRPLKRKSPLI DLNVVDVRNPDSCELQQQNYIKHLGVPSVTRKQSMSTWLEEQWYTCPEEINGEDIGEKSN IYALGVLLFELLCHCESSEMHAAMMADLRHRILPPAFLSRYPKEAGFCLWLLHPEPSSRP TAREILKSELICEEDSVKSTAADEEISELLLHFLSSLEKQKKKNASKLLQDIQTLEDDIK EAERRYSSRASVVTSHEAIERKMQSSPVGERCTTTSVALFVPTANTDRLMSNIRQLEEAY FFMRQQMKLSDSAASARSDKSLLKDQDKWSESQNKDQDTRTKGKSSDQLEVFFEGLCKFA RYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISKKIKIFDFNAFMNESVGVH YPLVEMVNKSKLSCVCWNSYIKNYLASTDYDGVVQIWDAGTGQGFSQYTEHQKRAWSVDF SPSDPTKFVSGSDDCSVKLWSVNEKRSLGTIWSPANVCCVQFSAYSNHLLAFGSADYKVY CYDLRYVKTPWCTLAGHEKAVSYVKFVDSETIVTASTDNSLKLWNLNKTTSSGLSPGACS MTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYRSLPMPMTSYKFGSVDPISGNEYFD DNGQFVSSVCWRKKSNMLVAANSTGNMKLLKLV NT seq 3162 nt NT seq  +upstreamnt  +downstreamnt atgaatgcgatggaaagagtgggtggtgaagaaagagtggggagtaacaagaacgtggag ttgaaaggaggaagagtggataatgatgttccttgcacgatggtgactactgattcagaa cctgggaggagcgattgtcctggaagctcagctcctcctcctcacaggaatcttcttgtt gatatcaacaacaagcctcctcctgaggaatctccaggagctaagatctccgtcgaagag cttacttatagagctgctgttcaagggagtagtcataatcataatcataatcataatcat aatcatatggagagttctagggccgctggcaagtttgagcatctctaccgtctcggctct tctgctgcgtttaggggaggaggagatggaggagatgtcgattctcaacctcgtgatatg gatcagatgttgtcgaggatcaggcagcagctcgcgggagctccttccgagaggcaaaac ttgaagccttttgtgaacaagaggagcgatcagaatctcgaggctttctccgaacgtctg agagcagctggtggggagaacggcgttatgaacgggcctggatggatcaacgacggtgtc cagtccaaaacgccgttgagttcttccagtttttctcagctgatacttaaacgagctatg aaggggaaaggtgtagttggtaaacaccaggaagctcctcctcctcctcctcctcctgag tttgtttgtgatcaagatggtgtatgcaaggataaaaagttggataatagcagcagcaag tcgcctcttgttgctcatgatccctcgttgcctctaaaaccaatccccaaaggtcataat gggattgtatcgaatggtgaagggaatcatactatttcttcttcttcttgtggaatcagt ttgagggagtttattagatcgagttatggtaaacgtgagaaacgacacagcctttctcta tttaggcagctggtggagctgattggctcagcgcattcacaaggattgttcttgctggaa ctgagaccatcccttttcgccttggtcccatccaagaaacttagatataatggtactttc ggaaagagcagtatagaatcggatgttgacgaagattttaataggaagaggcacgtgatt caggaatcatctactgggggtaggggtttgaagaaaagaagaatggacttgaatgctcca gggaatcaacttcaggccacttcaagtgggagacctttgaaaaggaaaagccccttgatt gatttaaacgtggttgatgtacgtaatccagacagttgtgaacttcaacagcaaaactat atcaaacatttaggcgtgccttcggtgacgagaaaacagtctatgtccacatggctagaa gagcaatggtatacttgtccagaggagataaatggagaagatatcggagaaaagtcaaat atatacgcccttggtgttcttctgtttgagctgctatgccattgtgagtctagtgagatg catgctgcaatgatggcagatttacgtcatcggattctcccacccgcatttctctcaaga tacccaaaggaagctggattttgtctttggcttctgcatcctgaaccctcctcccgacca acagctagagaaatactaaagtctgagttgatatgcgaggaggactcagttaaatcgact gctgctgatgaggagatatctgagctgttacttcactttttgtcttcacttgaaaagcag aagaagaaaaatgcatctaagcttttgcaagacatccagaccttggaggatgatatcaaa gaggctgagcgaagatattcttcaagagcatctgtggtgacatcgcatgaagctattgaa cgaaaaatgcaatcatctcccgtaggcgagcgctgtacaactacttctgtcgccttgttt gtaccaactgctaatacagacaggctgatgagtaatatccgtcaacttgaagaggcatat ttcttcatgagacaacaaatgaagttatcggattctgcggctagtgcccgttctgacaaa agccttctgaaggaccaggacaagtggtctgaaagccaaaataaggatcaggatacgaga accaaaggaaagtcttcagaccaacttgaagtgtttttcgaggggttgtgcaaatttgct cggtatagcaagttcgaaacctgtgggacgatcagaagtggagaccttttaaactctgcc agtgtggtctgctcgctaagttttgaccctgatgaggaacacatagcagcagctgggata tcaaagaaaatcaagatttttgacttcaacgcatttatgaatgaatctgtcggtgttcat tatccactagtagagatggtcaacaaatcgaaattaagctgcgtttgctggaatagttac atcaaaaactacttggcctcgactgactatgatggtgtagtccagatatgggatgctggg actggacaaggattttcccaatacacagaacaccagaagagagcctggtcagttgatttt tctccatctgacccgacaaaatttgtcagcggaagtgatgactgttcggtaaagctttgg agcgtcaatgagaaacggtcattaggtacgatctggagtccagcaaatgtgtgttgcgtg caattctctgcatattccaatcatttactggcatttgggtcagcggattacaaggtctat tgctatgatcttcggtatgtcaaaactccttggtgcacattggcaggccatgagaaagct gttagctatgttaagttcgtggattcagagaccattgtcactgcttccactgataactct ctcaagctttggaatctcaacaagacaacttcctctgggttgtctcctggtgcttgttca atgacgtataaaggacacacaaatcaaaagaactttgtcggcttatcggtcttggatgga tacatagcctgtggttcagagaccaatgaggtatatagttactatagatcgttaccaatg ccaatgacttcatacaagtttggatcagtggatcccatatctggaaacgagtactttgat gacaatggacagtttgtgtcgagcgtctgttggcgaaaaaagtcgaatatgcttgtagct gcgaattctacgggaaacatgaagctactaaaactggtttga

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