Raphanus sativus (radish): 108813273
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Entry
108813273 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH17
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
108813273
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108813273
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Meiosis-specific proteins
Others
108813273
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_C
ResIII
HHH_5
Cdd1
DNA_pol_lambd_f
IMS_HHH_1
HHH
AAA_22
DUF7898
Motif
Other DBs
NCBI-GeneID:
108813273
NCBI-ProteinID:
XP_018441293
UniProt:
A0A6J0K0S3
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All DBs
Position
6:16851680..16858206
Genome browser
AA seq
1126 aa
AA seq
DB search
MDTHTLKSVSDLPPNFRSAFSFRYFNSLQSECFPLCFHSDINMVISAPTGSGKTVLFELC
ILRLLSKSISGDGRFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDNE
TYSSKNIQDADIILTTPEKFDAVSRYRVTSGGLGFFGDIALVLIDEVHLLNDPRGAALEA
IVSRIKILSSNHELRLSTLASVRLLAVSATIPNIEDLAEWLKVPAAGIKKFGEEMRPVKL
TTKVFGYAAAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMT
YGYSNPFVKSREQLERLREASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLSGD
IQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMCGRAGRPPFDDTG
LVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTVTDVTRAIEWMKCSYL
YVRMKKNPENYTIKKGIPKDRVEKHLQELCLQKINELSSYQMIWTDTDGFVLKPEEPGRL
MTKYYLKFDTMKYIIHAPTGHSVDEALHIVCRAEEISWIQLRRNEKKTLNDVNADKEGRL
RFHINDNKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQDANSICSNGSRIARCMK
EYFIYKKNYKGTISSTLLAKSLFQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEALA
EADPRRIEIVTGRKYPFGNHIKESLSSLPPKVEIKVEEVECQKQGVSKLAVTLTRLSQPL
VSTKRHYADMIVGAEEENRIHFHEKIRMDDFSSPYSVTILLERPQQGKVTVKADLIFEEY
IGIDLHETLLLKKANNNTVNYKSENRMPHYYPPMVDVCIVDDDTPVKSAPPNRKDRKDDM
PSFKLIDEDSEEEKEPYVTMEEDDCVILNEHTVFDHIRQKAKCFPSLCTLNPTSPASEKS
TLKRKSLVKNSPELDPLFQYNSVFGSPTNTNDIKQSAQQTTSPVYAINKRSFSDETVFNY
IRKRSKNSPILATSKLEDPITNSPQEGGKAETSPYRSYGLLLPSPSAKIPSIKSGAPAEM
LSFDISMAKRSNTNLEENKKGSCSTLAAKSNGSDSFLGFKSIFSFL
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atggatacacacacgctcaaatctgtctccgatttgcctccaaatttccgctcagctttt
agtttcagatacttcaactcgctgcagagcgagtgttttccgctttgctttcactccgat
atcaacatggttatctcagcccccacgggaagtggcaaaaccgtgctttttgagctatgc
atcttgaggctactctccaagtctatctctggcgacgggaggtttctccatgcaaaagga
gctcttaaaacagtttacatatctccgtccaaggctttggtacaggagaagcttcgtgat
tggaatcagaagtttaattcgtggggaatcagttgtttggagctgactggtgataacgaa
acttacagttcaaagaatatacaagacgccgatattatcttgaccacccctgagaaattt
gatgcagtgagtcgttatcgcgttactagtggaggcttaggttttttcggtgatatagca
cttgtgctcattgatgaagttcacctgctgaatgatccacgaggagctgctctcgaggca
attgtcagtagaataaagattctttctagcaatcatgaactgaggttaagtactttagcc
tccgtgcgtcttctggctgtctcagctacaatcccaaacattgaggatctagcggaatgg
ctcaaggttcctgctgcaggaattaagaagtttggcgaagaaatgagacctgttaagttg
acaactaaagtttttggatatgctgctgccaagaatgacttcctctttgaaaagcgcctc
caaaactatatatatgacattttaatgcaatattccaaaggaaaatctgccttagttttc
tgctcgacaagaaaaggcgctcaagaggctgcacaaaagcttgcgcaaacagcaatgacc
tatggctactcaaatccatttgttaaaagcagagaacagctggaacgattaagggaggct
tcgccaatgtgcagtgacaaacaaatgcagtcttacattctccaaggcgttggttatcac
aacggtggtctttgccaaaaagaccgcagcctcgtagaagggctcttccttagtggagat
atccaagttctttgcacgaccaacactcttgctcatggaatcaacctgcctgcacataca
gtcgtcatcaaatcaactcaacatttcaacaaggaaaaaggtcactacatggagtatgat
cgttccacactactacagatgtgtggcagggctggtcggcctccatttgatgacacggga
ctggttattattatgactagaagagagacggtccatctatacgagaatctcttgaatgga
tgcgaggttgttgaatcacaattgctgccatgcttaatagagcacctaaccgcagaaata
gttcaacttactgtcactgacgttacacgggcaattgaatggatgaagtgctcatacttg
tatgtcagaatgaaaaagaatccagagaattatactattaagaaaggaattcctaaagat
cgagtagagaagcatctgcaagagctttgccttcagaagatcaatgagttgtcaagctat
cagatgatatggactgacacagacggttttgttttaaaaccagaagagcccggaaggctg
atgacaaagtactatctaaagtttgacacaatgaagtacattattcatgcgccaacgggc
catagcgttgacgaggctcttcatattgtatgccgagctgaagagatatcttggatacag
ctcagacgcaatgagaagaagaccttaaatgatgtaaatgcagataaagaagggcggctc
agattccacatcaatgataacaaaggaaagaggaaaaaacgcatccaaaccagagaagag
aaactctttgtgcttgcaaatgattggttgactggggatccttcagtccatgatttatcc
atgactcaggatgctaactctatatgctcaaatggatctagaatagctagatgcatgaaa
gagtactttatatacaaaaagaattataaaggaacgattagctcaactcttcttgctaaa
tcactctttcaaaagctctgggacgatagtccatatttgctgaaacaattgcctggcatt
gggatggttacagcaaaggcacttcattcgatgggagtcaggtcatttgaagctcttgct
gaagctgatccaagaaggatagagattgttaccggtcgaaaatacccttttggaaatcat
atcaaggaatctctatcttctctacctccaaaagtagaaatcaaggtcgaggaagttgag
tgtcagaagcaaggggtatcgaaactagcagtcacattgactcgactatcacaacctctc
gtatccacaaaacgccattatgctgatatgattgttggtgcagaggaagaaaatcgtatt
cattttcatgagaaaataagaatggatgacttctccagtccgtacagcgtcaccatactc
ctggaaagaccccaacagggtaaggtgactgtgaaggctgatctcatctttgaagaatac
attggtattgatctccatgaaacgcttctacttaagaaggcaaacaacaacacagtaaat
tacaaaagcgaaaacaggatgccacactattatcctcctatggtggatgtatgcattgta
gatgatgacactccagtaaaatctgcacccccaaaccgaaaggatagaaaagatgatatg
cctagtttcaagctcatagatgaagattcagaagaagagaaagagccttatgtgacgatg
gaagaagacgactgcgtcattctcaatgaacatacagtcttcgaccacatacgtcagaaa
gcaaagtgtttcccatcactgtgcactctgaatccaacctctccagcatcagagaaatca
acactgaaaaggaagagcttagtgaagaattctcctgaactcgatcctctgtttcagtat
aattctgtgtttggctcacctacaaatactaacgacatcaaacaaagcgcacagcaaacc
acaagcccggtttatgcaataaataagagatcattctcagatgaaacagtattcaactac
ataaggaaacggtccaagaactctcccatactcgccacgtcaaaactggaggatcctata
accaactctcctcaggaaggaggaaaagcagagacaagtccgtatagatcatacgggtta
ttattgcctagtccttctgctaaaataccaagcatcaaatctggtgcacctgcagaaatg
ctgtcgtttgatatctcgatggcaaagagaagcaacaccaacttagaggaaaataagaaa
ggatcctgctccacacttgcagctaagtccaatggttctgattcttttcttggatttaaa
agcatcttctcttttctgtga
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