Raphanus sativus (radish): 108813304
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Entry
108813304 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108813304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108813304
03012 Translation factors [BR:
rsz03012
]
108813304
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108813304
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108813304
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108813304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
ATPase
NPHP3_N
nSTAND3
Dicer_dimer
AAA_11
T2SSE
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
108813304
NCBI-ProteinID:
XP_018441330
UniProt:
A0A6J0K020
LinkDB
All DBs
Position
4:15919620..15926054
Genome browser
AA seq
1131 aa
AA seq
DB search
MKDRLPPPSLYVPPHQRLRSVPPDYAFHPLPISHTQSQKPLLPTTRYVSAYDDTVSEVAP
SLPDPVAFHCANLDEWRRNLSMLLRDSAKQEVISREKKDRRDFDKLSALATSMGLYSHAY
AKVVVFSKIPLPNYRFDLDDKRPMREVSVDTDLVKRVDAYLKDHLTKKPKRTNSFSRTSS
TSSMATDEGLLDQPELPAASKTAMDKILWQRSIQLRDRQDYWEKSVEGQRMLECRRWLPA
YKQRDAVLSAISQNQVIVVSGETGCGKTTQIPQFILESEIEANRGALCSIICTQPRKISA
MSVSERVACERGEPLGESVGYKVRLEGVRGRDTRLLFCTTGILLRRLLVDRNLRGVTHVI
VDEIHERGMNEDFLLIILKDLLPRRPELKLILMSATLDAELFSSYFGGAGVIHIPGFTYP
VCSYFLEDILEISGYRLTPYNQIDDYGQERLWKMNKQIPKKRKSQIASVVEDALRAADLN
EFSPGTRESLSLWNPDCIGFNLIEALLCHICENESPGGILVFMTGWDDISSLKDKLQNHP
IFGNPNRVMLLACHGSMASFEQRLIFEEPANGVRKIVLATNIAETSITINDVTFVIDCGK
AKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGQCYHLYPKCVYDAFAEYQLPEI
LRTPLQSLCLQIKSLNFGAISEFLSRALQSPELLAVQKAIEYLKIIGALDENEQLTALGR
YLAKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQFSRD
HSDHLALVRAYEGWKRAEEEAAVYDYCWKNFLSVQSMRAIDSLRKEFFSLLKDTGLIDGT
PATCKSGGNDENLTRAVICYGLYPGICSVVHNERSFSLKTMEDGQVLLYSNSVNARETKI
PYPWLVFNEKIKVNSIFVRDSTAVSDSVLILFGGSVSKGDFDGHLKMLGGYLDFFMKPAV
AVMYQTLKKELDELIQSKLLNPKMDMQAHRDLLLAIRLLVSEDRCDGSFVFGRQPLQPLG
TSAVSTQPTLVSRTESGPGGDNSKSQLQTMLTRAGHAAPMYKTKQLKNNKFQSTVEFNGT
QIMGQPCSNKKSAEKDAAAEAIRWLMGGGKESHEHVNHMSNLLKRSKKDHL
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcgtctccctcctccttccctctacgttccgcctcaccagcgacttcgctcc
gtccctccagattacgcgtttcaccctcttcctatctcccacacgcaatcacaaaagcca
ctcttgcctactactcgctatgtctccgcctacgatgacaccgtctccgaggttgctcct
tcactccccgacccggttgcatttcattgtgctaacttggatgaatggagaaggaacttg
tctatgcttttgcgcgattctgccaagcaagaagttatttccagggagaagaaagatcga
agggattttgataaactttctgcactcgctacaagtatgggcttgtatagtcatgcatat
gctaaggttgttgtgtttagtaagatcccactccccaactataggtttgatctagatgac
aagcgacctatgagggaggtgagtgtggacacggaccttgttaaaagagttgatgcttac
ctcaaagaccacctcactaaaaaaccaaagaggacgaattccttctcaagaactagtagc
acaagcagtatggccaccgatgaagggcttcttgaccaacctgagctcccggctgccagc
aagacggcgatggacaaaattctttggcaaaggagcatacagctgcgtgatcgacaagac
tattgggagaaatcggtagaaggtcaaagaatgctggaatgtcgcagatggctccctgca
tataagcagagggatgctgtattgtcagcaatatcacaaaaccaggttattgttgtctct
ggagaaacaggttgtggcaagaccacacagattccacagttcatattagaatcagagatt
gaagcaaaccgtggagctttatgcagtatcatatgtactcaaccaagaaaaatatctgct
atgtctgtatcggagagggttgcttgcgagagaggagagccgttgggtgaatccgttgga
tataaagttcgattggaaggtgttagaggaagagatactcgcctactcttttgcaccaca
ggcattctgttgagaaggttgttggtagatcgaaatttaagaggagttactcatgttatc
gtggatgaaattcatgagcgtggaatgaatgaagatttcttgcttatcattcttaaagat
ctcctacctcgccgcccagagcttaagctgattctgatgagtgcaactttagatgctgaa
cttttctcctcatactttggtggggcaggtgttattcacattccaggcttcacatatcca
gtatgtagttatttcttagaggatattctggagatttccgggtacagattgacgccgtac
aatcaaattgatgattatggtcaagaaagattgtggaagatgaacaaacagatcccaaag
aaaaggaagagtcaaattgcctctgttgtggaggatgcactgagagcggccgacttgaat
gagtttagtcctgggactcgagagtctttatctctttggaatcctgattgtattggtttt
aatctcatagaagctctcctttgccatatatgtgagaatgagagtccaggtggtatatta
gtttttatgactggatgggatgatatcagctctctgaaagataaacttcagaatcatcca
atctttggcaatccaaatcgggttatgttgcttgcttgccatggttctatggctagcttt
gagcagaggttaatatttgaagaacctgcaaatggagtaagaaagatagttctggccact
aatatcgcagaaacgagcatcacgatcaacgatgttacttttgttatcgactgcggaaag
gcaaaagagacctcctacgatgcattaaataacaccccctgtttgcttccttcttggata
tccaaggtttcagcccagcagagaagaggaagagctggtcgtgttcaacctggccagtgt
tatcatctgtacccaaagtgcgtatatgatgcttttgcagaatatcagttgcctgaaatt
ttgaggacgcctttacagtcactctgtttgcaaatcaaaagcttaaatttcggagccata
tctgagttcttatcaagggcattgcaatctccagaactgttggcggttcaaaaggccatt
gaatatcttaagataataggggcattggatgagaatgaacagctaacagctctaggtcgt
tatttggccaagcttcccatggagccaaagcttggaaaaatgctcatactaggagccatt
ctaggctgccttgatcccatattgactgttgcggctggtcttagtgtgagagatcctttc
ttgacacctttggacaagaaagatctagcagaagccgcaaaatcccagttttcacgtgat
cacagtgatcatcttgcacttgttcgggcatatgaggggtggaaaagagctgaggaagaa
gctgccgtatatgattactgctggaaaaactttctctcagttcagtcgatgagagctatt
gattctctccgaaaagagttcttctcactacttaaggataccggattaatagatggaact
ccagcgacctgcaagtcaggaggaaatgatgagaatcttacccgagcagttatttgctat
ggattgtatccaggaatctgctcggttgtgcataatgagagatcattttccctgaagact
atggaggatggccaagttcttctttattcaaattctgtaaatgcccgggaaacaaaaata
ccatatccatggttggttttcaatgagaagataaaagtgaactctatcttcgtgagggat
tcaacagctgtctctgactctgtgcttatcctctttggcggtagcgtttccaaaggagac
tttgatggccatctgaaaatgttgggaggatacttggattttttcatgaaacctgctgtt
gcagtgatgtaccaaaccttgaagaaagagcttgacgagctgatacagagcaaactactt
aatcccaaaatggacatgcaagcacaccgtgacctcttattggctatacggttattggtc
tctgaggatagatgtgatggaagctttgtgtttggtcgccaaccacttcagcctttagga
acgtcggcagtgtcaacacaaccgacattggtttcaaggaccgaaagtgggccagggggt
gacaattccaagagtcagctccaaacaatgctcacaagggctggtcatgcagcacccatg
tataagacaaagcaactgaagaacaacaagttccaatccacagtggagtttaacgggacg
cagatcatgggacagccttgcagcaacaagaagagtgccgagaaggatgctgccgctgaa
gcgatacgatggctgatgggtgggggtaaggaaagtcatgagcacgtgaatcatatgtca
aacctgctgaagagaagcaagaaggatcacctctga
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