Raphanus sativus (radish): 108813590
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Entry
108813590 CDS
T06014
Name
(RefSeq) cysteine protease ATG4a isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04136
Autophagy - other
rsz04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
108813590
04136 Autophagy - other
108813590
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rsz01002
]
108813590
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108813590
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108813590
Peptidases and inhibitors [BR:
rsz01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
108813590
Membrane trafficking [BR:
rsz04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
108813590
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108813590
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
FAM198
Motif
Other DBs
NCBI-GeneID:
108813590
NCBI-ProteinID:
XP_056845137
UniProt:
A0A9W3C0U8
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All DBs
Position
6:complement(52098344..52100847)
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AA seq
454 aa
AA seq
DB search
MKALTDRFVPQPSSSKSEKHETSLVSSDSEPSDNNNNKSKFTLRSESSTSGHKQVCAATW
TSLVKKVSMASGAIKRFHDRVLGPNRTGLPSTTSDVWLLGVCYKISEDEPSKEETDDGSV
VAELKQDFSSRILMTYRKGFEPIKDTTYTSDVNWGCMIRSSQMLFAQALLFHRLGRSWRI
NKSEQPEQDYLETLEPFGDSEASAFSIHNLILVGESYGLAAGSWVGPYAICRSWESLACK
KRKQTDSLPMAIHIVSGSEDGERGGAPVLCIEDATKSCVEFSRGEDEWAPLLLLVPLVLG
LDRVNPRYIPSLKATFAFPQSLGVLGGKPGASTYIVGVQDDNGFYLDPHDVQQVVTVNKG
TPDVVVDTSSYHCNVLRYVPLESLDPSLALGFYCRDKCDFDDLCLRASKLAEESKGAPLF
TVTQSHSLVTHHSSCEFVEDDTEEEREEDDWQLL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctttaaccgataggtttgttccccaaccatcatcaagcaagagtgaaaagcac
gaaacatctctagtttcgtcagattcagaacctagcgataataataataacaagtccaag
tttaccttgcggtcggagtcttcaacctcggggcataagcaagtttgcgctgctacttgg
acatcgcttgtaaagaaagtctctatggcgagtggtgcgatcaagaggttccacgatcgt
gttttaggaccaaacaggactggtcttccgagcactactagtgatgtctggctcttgggc
gtctgttataaaatatctgaggacgaaccctcaaaggaagaaacagatgatggcagcgta
gtggctgaactgaaacaagatttttcttccagaatactgatgacatatcgtaaaggtttt
gagcctattaaggacacaacctacaccagcgatgtaaactggggttgcatgatacggagc
agccagatgttgtttgctcaggcattgcttttccatagactggggaggtcttggaggatc
aataaatccgagcagcctgagcaggactacttagagacgttggaaccttttggtgattcg
gaggcttcagctttctccatccacaatcttatcctagtgggagagtcttacggtctcgca
gccgggtcatgggtaggaccgtatgcgatttgccggtcgtgggagtcgttagcgtgcaag
aagagaaaacaaaccgattcgcttcctatggctattcatatagtttctggcagcgaagat
ggggagagaggtggagctccggttctctgtatagaagatgcgaccaaatcttgtgtggaa
ttctctagaggagaggatgagtgggcaccgcttctgctcttggtcccattggttctcggt
cttgacagagtgaaccccaggtacattccatctctcaaagccacgttcgctttccctcaa
agccttggagttttgggtgggaagccaggtgcttcgacttacatagttggtgttcaagat
gacaatggtttctaccttgatccgcatgatgttcagcaggtagtcacagtgaacaaggga
actccagatgttgttgttgacacgtcctcatatcattgcaatgtcctacgttacgttcct
ttggagtcgcttgacccatcactagctcttggattctattgccgcgacaaatgtgacttc
gatgacttgtgtctccgagcatcgaaactggctgaggaatcaaaaggtgctccgttgttc
acggtgactcaatcccacagcttggttacccaccacagcagctgcgagtttgtggaggat
gatacagaggaagaacgtgaagaagatgactggcaattgctctga
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