Raphanus sativus (radish): 108813610
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Entry
108813610 CDS
T06014
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 6
KO
K05391
cyclic nucleotide gated channel, plant
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
108813610
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rsz04040
]
108813610
Ion channels [BR:
rsz04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
108813610
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Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
PHM7_cyt
IQ
Motif
Other DBs
NCBI-GeneID:
108813610
NCBI-ProteinID:
XP_018441712
UniProt:
A0A6J0K1B1
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Position
6:42828074..42831615
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AA seq
735 aa
AA seq
DB search
MDSKSQLISGHREKFVRLDSRSPEQGLNRCTLNIKRPKRFTQATKTSSGSFKKGFRKGSE
GLWSIGRSIGLGVSRAVFPEDLKVSEKKIFDPQDKFILLCNKLFVASCILAVSVDPLFLF
LPFINDKAKCVGIDRKLAIVTTTLRTVIDSFYLFHMALRFRTAYVAPSSRVFGRGELVID
PAQIAKRYLQQYFIIDLLSVLPLPQIIVWRFLYTSRGANVLATKQALRYIVLVQYIPRFL
RMYPLSSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGALWYLLALERNNDCWSKACKD
NGNCTRNFLFCGNQNMKGYDAWDTVKDPFLQLRCPVNVTDGDEPPFDFGIYLRALSSGIV
SSKKFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSIVLAIAGLLLFALLIGNMQTY
LQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVSNLPK
DLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTEKSFLVREGDPVNEMLFI
IRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVE
AFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYTKRKKLEQLR
KEEEELEEESSAARLIATGGSHYSIRATFLASRFAANALRSVRKNRTAKLLALSQPTKEL
LKVQKPPEPDFSADC
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggactcaaaatctcaattaatcagtggccatcgcgagaagtttgtcaggttggatagt
aggagtcctgaacaaggtctaaacagatgcacattaaacataaaaagaccaaaacgtttc
actcaagcaaccaaaacatcgtccggttctttcaagaaaggcttcagaaaaggatccgaa
gggctatggtccataggcagatcaataggactcggtgtttcccgcgccgtcttccccgaa
gatctcaaagtttcagagaagaagatattcgatccgcaggacaagttcatcctcctctgc
aacaagctcttcgtagcttcttgtatcctcgctgtgtccgtggacccgctcttcctgttt
cttccgtttatcaacgataaagccaaatgcgtcggtatagaccggaagctagcgatcgtg
acgaccacgctgaggacggtcatagattctttctatctctttcacatggctttgaggttc
agaacagcttacgttgctccttcgtcgcgtgtttttggtcgtggagagcttgtgatagac
cctgcgcagatagctaaacggtatcttcaacagtacttcatcattgatttgctctctgtg
cttccccttccacagattatagtatggagattcctctacacttctagaggtgcgaacgtt
ctggctacaaagcaagcacttagatacatcgtgttagtccagtacattccgcggtttctt
cgtatgtatcctttaagttcagagctgaagagaaccgcaggagtatttgctgaaactgct
tgggctggtgctgcttactacttgcttctttacatgcttgcaagtcatattgttggggcg
ttgtggtatttgcttgccttggaacgaaataacgattgctggagtaaagcttgcaaagac
aacggtaactgtactagaaactttttgttttgtggtaaccaaaacatgaaaggttatgat
gcttgggacactgttaaagatccgtttcttcagctgcgttgtcctgtcaatgtcactgat
ggtgatgagcctccctttgattttgggatctacttgagagctctctcctccggcattgtc
tcttctaaaaaatttgtctcaaagtacttcttctgcttgtggtggggactacaaaatctt
agtacgcttggtcaagggcttgaaacaagcacataccctggagaggttatattctctata
gtacttgctattgctggacttctactctttgccctcctcattggaaacatgcagacttat
cttcaatcgcttactatccggttagaagaaatgcgagtcaagagacgtgactcggaacag
tggatgcatcaccgaatgcttccacctgaactaagggaacgtgtcagaagatatgaccag
tacaagtggttggagacgcgtggagttgatgaagagaatctcgtttccaacctcccaaag
gatcttaggagagacatcaaacgtcatctctgtctcgccttagtccgaagagttccgttg
tttgagaacatggacgagagactgctagatgcaatctgcgagcgtctcaagccgtgtctc
tacaccgagaagtctttcttggtccgtgagggagaccctgtgaacgagatgctcttcata
atccgcggtcggctcgagagtgtgacaacagatggtggaaggagcgggttctacaaccgc
agcttacttaaagaaggagacttctgcggcgacgagcttctgacgtgggccctagatccc
aaatcaggctctaacctaccgtcctcgacaagaaccgtcaaggccttaaccgaagtagaa
gctttcgctttgatagctgatgagctcaagttcgtggcgagtcagttcaggagactgcac
agcagacaagtgcaacacactttcagattctactcgcagcagtggaggacttgggccgct
tgcttcatgcaggctgcgtggagaaggtacacgaagaggaagaaacttgagcagcttaga
aaagaagaggaggagctagaggaagagtcttctgctgcgaggcttattgctacgggaggc
agtcattatagcatcagagcgacgtttttggcttcgaggtttgcagctaatgcgcttcgt
agcgttcgcaagaaccggactgccaagttgttggctttgtcacaaccaactaaagagttg
ttgaaagttcagaaacctcctgaaccagacttctctgctgattgctaa
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