KEGG   Raphanus sativus (radish): 108813721
Entry
108813721         CDS       T06014                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz04120  Ubiquitin mediated proteolysis
rsz04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108813721
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    108813721
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rsz04121]
    108813721
Enzymes [BR:rsz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108813721
Ubiquitin system [BR:rsz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108813721
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     108813721
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_2nd zf-C3HC4_2 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_EML WD40_RFWD3 zf-C3HC4 WD40_like Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st zf-C3HC4_3 zf-RING_2 Beta-prop_WDR35_TULP_N zf-RING_UBOX Beta-prop_DCAF12 Beta-prop_IFT122_1st zf-C3HC4_4 U-box Beta-prop_SCAP WDR90_beta-prop_4th zf-RING_5 YbfN YpoC Beta-prop_IFT122_2nd DUF1664 zf-RING_6 zf-RING_10 Prok-RING_4
Other DBs
NCBI-GeneID: 108813721
NCBI-ProteinID: XP_018441855
UniProt: A0A6J0K1M4
LinkDB
Position
6:47810847..47814668
AA seq 676 aa
MEEITKDPIVPASKPDPRTSSVVGEGFNNDDGGGSGGGSEIKALDLDKDLLCPICMQVIK
DAFLTACGHSFCYMCIITHLRNKSDCPCCTQHLTNNQLYPNFLLDKLLKKTSARHVSKTA
TPLDQFREALQRGCDVSIKEVDNLLTLLAEKKRKMEQEEAERNMQILLDFLHCLRKQKVD
ELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRSAWLLEKNQHGFN
SNSLSIRGGNPLGNFQNKKVEGKAQGSSHGMSKKDAVSGSDSQSLNQSTVSMARKKRIHA
QFNDLQECYLQKRRQLVDQPQHTSQESDNSVVRREGYSHGLADFQNVLTTFTRYSRLRVI
AEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADIQCPIVEMST
RSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSML
VSGSDDCKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNFIAVGSADHHIHYYDLRNIS
QPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLT
VNSEYLACGSETNEVYVYHKEITRPVTSHRFGSLDMEEAEEEAGSYFISAVCWKSDSPTM
LTANSQGTIKVLVLAA
NT seq 2031 nt   +upstreamnt  +downstreamnt
atggaagagattacgaaggatccgattgttccagcttcgaaacccgatccgagaacctcc
tccgtcgtcggagaaggctttaacaacgacgacggaggaggaagcggtggcggttcggag
attaaagctctggatctggataaggacttgctctgtccgatttgtatgcaggttataaaa
gatgctttcctcacggcgtgtgggcacagcttctgctatatgtgtatcatcacccacctt
aggaacaagagcgattgtccctgttgtacccagcacctcaccaacaatcagctttaccct
aatttcttactcgacaagctgttgaagaagacttcagctcggcatgtgtcgaaaactgca
acgcctttggatcagtttcgggaagcactgcaacggggttgtgatgtgtcgattaaagag
gttgataatctcctcacacttcttgcggaaaagaagagaaaaatggagcaggaagaagct
gagaggaacatgcagatactcttggactttttgcattgtctgaggaagcagaaagttgat
gaactaaatgaggtgcaaactgatcttcagtatattaaagaagacataaatgcagttgag
aggcatagaatagatttataccgtgctcgggataggtactccgtgaagctgcggatgctc
ggagatgatccaagcacacgaagtgcgtggctccttgagaagaatcagcatggcttcaac
tccaattctctgagcataagaggggggaatccactagggaattttcaaaacaaaaaggta
gagggaaaggcacaagggagctctcatgggatgtcgaaaaaggacgcagtgagtggatca
gattcccagagtttgaatcaatcaactgtctcaatggccaggaagaaacggatccatgct
cagttcaacgatctacaagaatgttacctccaaaagcggcgtcagttggtagaccaacca
caacatactagtcaagaaagtgataatagtgtagtgcgtagggaaggctacagccacggc
cttgcggattttcaaaacgtgctgactacgtttactcgctacagtcgtctgagagttata
gcggagatccggcatggggatatatttcattcagccaacattgtatcaagcatagagttt
gatcgtgatgatgagctgtttgccactgctggtgtttctagatgtataaaggtttttgac
ttctcttcggttgtaaacgaaccggcagatatacagtgtccaattgtggagatgtcaacg
cgctctaaacttagttgtttgagttggaataagcatgagaaaaatcatatagcaagcagt
gattatgaaggaatagtaactgtatgggatgtaactactagacagagtcttatggagtat
gaagagcacgaaaaacgtgcctggagcgttgatttttcgcgaacagaaccatctatgctt
gtatctggtagtgatgattgtaaggttaaagtttggtgcacaaggcaggaagcaagtgtg
cttaacattgatatgaaagcaaacatatgttgtgtcaagtacaatcctggctcaagcaac
ttcattgcggttggatcagctgaccatcacatccattattacgatctaagaaacataagc
cagccacttcatgtcttcagtggacacaagaaagcggtctcctatgtgaagtttttgtcc
aacaacgagctcgcgtctgcgtctactgatagcacactacgcttatgggatgtcaaggac
aacttgccagttcggacatttagaggacacactaacgagaagaactttgtgggtctcaca
gtgaatagcgagtatctcgcctgcggaagcgagacaaacgaagtatatgtatatcacaag
gagatcacgagacctgtgacatcgcataggtttggatcactagacatggaagaagcagag
gaagaggcgggttcatactttattagtgcggtttgctggaagagtgatagtcccacgatg
ctgactgcgaatagccaaggaaccatcaaagttttagtactcgctgcttga

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