Raphanus sativus (radish): 108814493
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Entry
108814493 CDS
T06014
Name
(RefSeq) homeobox-leucine zipper protein HDG1
KO
K09338
homeobox-leucine zipper protein
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108814493
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
108814493
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
108814493
NCBI-ProteinID:
XP_018442581
UniProt:
A0A6J0K539
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Position
7:complement(15894445..15898372)
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AA seq
770 aa
AA seq
DB search
MNFNGYLGDGSSGDHFSFSAASTMPHSRPFSSNGLSLGLQTDGVNGGGEAFETNATRNKS
RGGEDGESRSESDNAEAVSGDDLETGDKPPRKKKRYHRHTAKQIQDLESVFKECAHPDEK
QRLDLSRRLNLDPRQVKFWFQNRRTQMKTQIERHENALLRQENDKLRAENMSVREAMRNP
MCSNCGGPAVLGEVSMEEQHLRIENSRLKDELDRVCALTGKFLGRSPPGSHHVPDSSLVL
GVGSGGCGFTLSSPSLPQASPRFEISNGTGLAEPPVSDFDQRSRYLDLALAAMEELVKMA
QRHEPLWIRSSDNGFEMLNKEEYDASFSRCVGPKQDGFVSEASKETGNVIINSLALVETL
MDSERWAEMFPSMISRTSTTEIISSGMGGTRNGALHLMHAELQLLSPLVPVRHVSFLRFC
KQHAEGVWAVVDVSIDSISEGSSSGCRRLPSGCLVQDMANGYSKVTWIEHTEYDENRIHR
LYRPLLSCGLAFGAQRWMAALQRQCECLTILMSSTVSPSRSPTPISCNGRKSMLKLAKRM
TDNFCGGVCASSLQKWSKLNVGNVDEDVRIMTRKSVNDPGEPPGIVLNAATSVWMPVSPK
RLFDFLGNERLRSEWDILSNGGPMQEMAHIAKGHDHSNSVSLLRATAINANQSSMLILQE
TSIDAAGAVVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAILPNAPQGSEERNGNGGCME
EGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCDIT
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaacggttatctcggcgacggttcttccggtgaccacttctctttctccgcc
gcatccaccatgcctcactctcgtcccttctcctctaacggtctctcccttggactccaa
acggatggagtaaacggaggaggagaggctttcgagacgaatgcgactcgtaataagagt
agaggaggagaagatggagaaagcagatctgagagtgataacgccgaagctgtctccggc
gacgatctcgaaaccggtgataaacctccgaggaagaagaaacgttaccatcgtcacact
gctaaacaaatacaagacctcgaatcggttttcaaggagtgtgcacatcccgacgagaaa
cagcgtcttgatctcagccgtcgtctcaacttagatccacgacaggtcaagttctggttc
cagaaccgccgtactcagatgaagactcaaatcgaacgacatgagaatgctttgttgaga
caagagaacgataagcttcgagctgagaacatgtctgtacgcgaagcaatgagaaaccct
atgtgcagcaactgcggcggaccagcagtcctcggcgaggtctccatggaagagcaacac
cttcgcatcgaaaactcgcgtctcaaagacgagttagaccgggtctgcgccttaaccggt
aaattccttggccggtcaccccccggttcacatcatgtgccggactcatcactcgtcctc
ggagttggatccggtggttgtggtttcactctctcctctccctccttgcctcaagcttct
ccgagatttgagatctctaatggtaccggtttagctgaaccaccggttagtgattttgat
cagagatcgaggtatctggacttggctcttgcggctatggaggagcttgtgaagatggct
cagagacacgagccgctttggattcggagctcggataatgggtttgaaatgcttaacaag
gaagagtacgacgcaagtttcagtcgatgtgttggaccaaagcaagatgggtttgtgtct
gaagcttctaaagaaactggaaacgttatcatcaatagcttagcactcgttgaaaccttg
atggactcggaacgatgggcggagatgtttccgtctatgatctcaagaacatcaaccacg
gagattatctctagtggcatgggagggacacgaaacggtgcacttcatctgatgcacgca
gagcttcaactgttgtctccacttgtgcctgttcgacatgtctcgttcttgcggttctgt
aagcagcacgcggaaggtgtttgggcagttgtagatgtctcaattgattccataagcgaa
ggttcttcttcaggctgtagaaggttaccttctggttgcctcgtacaagacatggccaat
ggctactccaaggtaacgtggattgagcacacggaatacgatgaaaaccgcatccaccgt
ttataccgcccgttactcagctgcggtctagcgttcggtgcacagcgttggatggctgcg
ttacaacgtcaatgtgaatgcctcaccattctcatgtcctccactgtttcaccttcacgt
agcccaacacccattagctgcaacgggaggaagagcatgttgaagttagcaaagaggatg
actgataatttctgcggcggcgtatgtgcatcgtcgttacagaaatggagcaaacttaac
gtcggtaacgtggatgaagacgttaggattatgactaggaaaagtgtgaacgatcctggt
gaaccgcctggaatcgttttaaacgctgcgacttcggtttggatgcccgtttctccaaag
cggttgtttgattttcttggaaatgaacggctgagatctgaatgggacatcttatccaac
ggtggtcccatgcaggaaatggctcatatcgctaaaggccatgaccattcaaactctgtc
tccttactccgtgccaccgcaataaatgcgaatcagagcagtatgctgatactacaggag
acaagcatagacgctgcaggagcggttgtggtgtacgcgcctgttgatattcctgctatg
caagctgtgatgaacggtggagattctgcttacgtggcactacttccctcaggattcgcc
attctccctaacgctccgcaagggtcagaggaacgtaacggtaacggtgggtgcatggag
gaaggagggtcgttgctaacggtggcgtttcagatactggtgaatagtttgcctacagct
aagctcacggtggaatctgtagagacggttaataatctgatatcgtgtaccgttcagaag
attaaagctgctcttcattgtgatatcacctga
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