Raphanus sativus (radish): 108814911
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Entry
108814911 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108814911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108814911
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108814911
mRNA degradation factors
5'-3' decay
Decapping complex
108814911
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
108814911
NCBI-ProteinID:
XP_018443060
UniProt:
A0A6J0K532
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Position
7:complement(24532179..24535930)
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AA seq
783 aa
AA seq
DB search
MERSDSRDSYKLGRASSDTNKSTLFDSSQYEFFGQSLEEVDLGGLDDAVLGHANDDDGYL
LFDKREGVCLGSLSDMDDLATTFAKLNRDVTGPKHPGVIGDRGSGSFSRESSCATDWTQD
NELTSWLDQHMIEEQAQEASWSSKRHSSANSNSLYRTSSYPEQKMQLHHYNSEPIIVPES
SSFTSFPAPGNRSQLSSPSHIHRAPSLPGGSQLNFSAPNGSPLSNSMFHHSGLSHGPPHY
GSNLARYASCGPTLGNMVQPPHWVTDPGLLHGDHSGLLHSLVQQQLPPRNGFTSQQLISH
QQRQSLAQLAVLXSQLYSSCPSPSHKVPFGVGEVREYKHKSRSRKNKGGGGLSQQASDLS
SQKSETVLQFRSKYMTSEEIESILKMQHSNSHSNDPYVNDYYHQARLVKKNSAGSREKPQ
FYPCHLKDHHSRSRSSSSSSDQQPKAHVDALGKITLPYVSRPRALLEVDSPPSSGSDGRF
NHKGSEKHLEQEPLVAARVTIEDAFGVLIDIVDVDRTLQFNRPQDGGSQLRRKRQILLEG
LATSLQLVDPFSKTGGLTTKDDIVFLRIATLPKGRKLVTQYLQLLVPGTEIARVVCMAVF
RHLRFLFGGLPSDTAAAETIANLAKAVSVCVQAMDLRALSACLAAVVCSSEQPPLRPLGS
PSGDGASVVLVSLLERAAEVARVKNSNDGLWRASFDEFFSLLTKYCRSKYETIHGQNQDN
AAHVLEVAIKREMPAELLRASLRHTSDDQRNFLLNFGHKASPVSDSTTSRARDGQINSES
VRV
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgattctagagattcctacaagttaggtcgagcttcatcagatactaat
aaaagtacactctttgactcatctcaatatgagttctttggtcaaagtcttgaagaagtt
gatttgggaggtcttgatgacgctgttctcggacatgccaatgatgatgatgggtatctt
ttgtttgataaaagagagggtgtatgtttaggatcattatctgacatggacgatcttgcc
acaacttttgctaagctgaacagagatgtcacgggccccaaacaccctggagtcattggc
gacagaggatcaggttccttttcaagggaaagttcttgtgctacagattggacacaggat
aatgagctcacaagttggttggaccagcacatgattgaagagcaagctcaggaagctagc
tggtcttcaaagcgacactcatcagctaactcaaactctttgtacaggacatcctcatat
cctgagcagaaaatgcagctgcaccactacaatagtgaacccattattgtacctgaatca
tcatcctttacctcttttcctgcgcctggcaatagatctcaactgtcttcaccgagccat
attcatcgtgctccttctcttccgggtggtagtcagttaaacttctctgctccaaacggc
tctcccttgtcaaactctatgttccatcattcaggattgtcacacggaccgccacattat
ggtagtaacttggctagatatgcctcatgtggtcctactcttggcaacatggtgcagcct
cctcactgggttaccgaccctggccttctgcacggtgatcattccgggttgttacacagt
ctcgtgcaacagcagctgcctcctaggaatggttttacttcacagcagttgatttcacat
caacagagacaatctctagctcaacttgccgttttatagtctcagctgtatagttcctgt
ccttcgccgtcacacaaagttccttttggggttggcgaagtaagagaatataaacataag
tctagaagtcggaagaacaaaggcggaggaggtctctcccaacaggcatcggatttgtct
agccagaaaagtgaaaccgtgttgcagtttagatccaagtacatgacttcagaagaaata
gagagtattctcaagatgcaacattccaattcccacagtaatgacccttacgtcaatgat
tattaccaccaagctcggcttgtgaagaaaaattcagctggttctagagaaaagcctcag
ttctatccttgtcatctaaaagaccaccactctcggtcccgtagtagtagtagtagctca
gatcagcaaccaaaagctcacgtggatgctcttggaaagattactcttccttatgttagt
aggccacgagctctactagaggttgactctcctcctagttctggtagtgatgggaggttt
aatcataagggatctgaaaagcatctggaacaggaacctcttgttgcagctagggtaacc
attgaagatgcttttggtgttcttatcgatatagttgatgttgataggactcttcagttc
aacagaccacaagatggtggttctcagctaaggagaaagcggcagatcctcctagaagga
ttggcaacttcacttcaacttgttgatcccttcagcaaaaccggcggattgacaaccaag
gatgatatagtctttctacgcatagcgactcttcccaagggtcggaaactggtcacacag
tatctacagcttcttgttccgggtactgagatcgctcgggttgtctgtatggctgtattt
cgccacctcaggtttttattcggtggcctaccgtcggataccgctgcagcagagacgata
gcgaatcttgctaaagcggtttcggtttgtgttcaagcaatggatctccgagcactcagt
gcttgccttgcagctgttgtttgttcttcagaacagccacctctccgtccattaggaagt
ccttctggggatggagcgtcagttgtcttggtgtctcttcttgagagagctgctgaagtt
gcacgtgtcaagaactcgaatgatggactgtggagagcctcgtttgatgaattcttctca
cttcttaccaaatattgcaggagtaagtatgagacgattcatggtcagaaccaggacaat
gcagctcatgtgctggaggtagctataaagagggaaatgcctgctgagcttctgcgtgcg
agcctacgccatacaagtgatgaccagcgtaactttttactaaactttggtcataaagca
tcaccggttagcgactcaacaacatctcgtgcaagggatggtcagattaactctgagtct
gtgagggtttaa
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