Raphanus sativus (radish): 108815440
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Entry
108815440 CDS
T06014
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108815440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108815440
03009 Ribosome biogenesis [BR:
rsz03009
]
108815440
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108815440
Spliceosome [BR:
rsz03041
]
Complex A
U2 snRNP components
U2 related factors
108815440
Complex B
108815440
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108815440
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
Helicases
108815440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
AAA_30
ABC_tran
AAA_7
T2SSE
SRP54
NACHT
TsaE
ATPase
Motif
Other DBs
NCBI-GeneID:
108815440
NCBI-ProteinID:
XP_018443546
UniProt:
A0A6J0K7V2
LinkDB
All DBs
Position
7:complement(13236007..13238172)
Genome browser
AA seq
679 aa
AA seq
DB search
MEMNKWNGKAYTRSYYEILEKRRSLPVYAQKQEFLQCLMSNQTVILVGETGSGKTTQIPQ
FVLEAVHVDDAGKNPRKWLVGCTQPRRVAAMSVASRVAEEMDVAIGEEVGYTVRFEDCTS
SKTVLKYLTDGMLLREAMTDPLLQRYKVLVLDEAHERTLATDLLFGILKRVLRNRPDLKL
VVMSATLEAEKCLEYFSGAPLMKVPGRLHPVEILYTREPERDYLDAAVRTVVQIHMFEPP
GDVLVFLTGEEEIEEACRKIVGELGDQVNVVPLYSSLPPAMQQKIFDPATGNRRKIVVST
NIAETSLTIDGVVYVVDPGFAKQKLYNPKTRVESLLVSPISQASARQRAGRAGRTRPGKC
FRLYTEKSFNNDLIAQTHPEILRSNLANTVLTLNKLGVDNLVSFEFMDSPAPVTLGGALS
DLVDLGALDADEGKFGNLTRTGEMMSEFPLDPQMAKMLIVSPKFNCSNEILSISAMLSVP
NCFIRPRGEARKEADEARARFGHVDGDHLTLLNVYNAYKQNNGDSNWCYENFISHRAMKS
AENVREQLVRIMSRFNLKICSSDYTSRDYYNNIRKALLAGYFMQVAHLDRTGCRYLTAKD
DQMVHLHPSCCLDYKPEWVVYNEYVLTSRNFIRTVTYIRGEWLMDVAPQCYHLNNFKNCE
TKRVLQKLSKKRDREGNPK
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagatgaataaatggaatggaaaggcttatactcggagctattacgagattctagag
aaacggaggagcctacctgtgtatgcgcagaaacaagagtttctccaatgtttgatgagc
aaccagacagtgatacttgtcggtgaaaccggtagtggtaaaacaacacagatcccacag
ttcgttttggaagccgtgcacgtggacgacgcaggaaaaaaccctagaaagtggctggtc
gggtgcacacagcctcgtagagttgcagccatgtctgtggcaagtcgtgtcgctgaagag
atggatgtagctatcggtgaagaagtaggttacacggtccgtttcgaggattgcactagc
tccaaaacagtgctcaagtacttaaccgacggtatgcttctgagagaagcaatgacggat
ccgcttctacagagatacaaagtgttggttctcgacgaggcccacgaaagaacgttagct
acggatctactctttggcattctgaaacgagtcttgagaaacagaccggaccttaagctg
gttgtgatgagtgctactttggaagctgaaaagtgtctcgagtattttagcggtgcacct
ctcatgaaagtccccggcaggctccatcccgtagagatcttgtacacgcgagaacctgag
agagactatctcgacgctgctgttaggaccgttgttcagattcacatgtttgagccgcct
ggtgacgttcttgttttcttaaccggtgaggaagagattgaagaagcatgccgaaaaatc
gtcggtgagcttggggatcaagtcaacgtcgtgccgttgtattcttctcttccacctgct
atgcaacagaagatctttgatcccgctacggggaataggagaaagattgttgtatccacc
aacatcgcagagacttctttaaccatcgatggggttgtctacgtggttgatcctggtttc
gctaagcagaaactatacaaccctaaaacccgtgttgagtcgttgttggtgtctcctata
tcacaagcaagtgctcgccaacgagcaggtcgtgcaggtagaacacggcctggaaaatgt
ttcaggctttacacagagaagagtttcaacaacgatctgattgcgcagacgcatcctgag
atattgagatcgaaccttgcaaacactgttctgaccttgaataaacttggtgtggataac
ttggttagcttcgagtttatggattctcctgctcctgtgacgctgggtggggccttgagc
gatttggttgatcttggagcattagatgctgatgaaggtaagttcggtaacttgacaagg
acaggtgagatgatgagtgagtttcctttggatccgcagatggcaaagatgctcatagtc
agtcctaaattcaactgctccaacgagatcctctcgatttcggcgatgctatcagtaccg
aactgctttataaggcctagaggagaggctcggaaagaagcagatgaggccagagctagg
tttggacacgttgatggagatcacctgacgttgctgaatgtgtacaatgcttataaacaa
aacaatggagactcgaactggtgctacgagaacttcatcagccatagagcaatgaagtct
gcggagaatgttagagagcagttggtgaggataatgtccaggtttaatctcaagatttgc
agctctgattatactagccgcgactactataataacataagaaaggcattgcttgctggc
tatttcatgcaagtggctcatttagaccgcactggctgccgctacttgaccgccaaagat
gaccaaatggttcacttgcatccatcgtgttgcctggattacaaaccggagtgggtagtc
tataatgaatatgttttgactagtcggaatttcatccggactgtcacatatattcgaggt
gaatggctaatggatgttgcaccacagtgttatcatcttaacaacttcaaaaactgtgag
accaaacgagtcctccagaagctttctaagaagagagacagagaggggaatccaaagtga
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