Raphanus sativus (radish): 108815838
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Entry
108815838 CDS
T06014
Name
(RefSeq) dicer-like protein 4
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
108815838
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108815838
microRNA pathway
RISC loading complex
108815838
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
dsrm
DND1_DSRM
PAZ
Cas3-like_C_2
IstB_IS21
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
108815838
NCBI-ProteinID:
XP_018443857
UniProt:
A0A6J0K793
LinkDB
All DBs
Position
7:complement(6377524..6387119)
Genome browser
AA seq
1625 aa
AA seq
DB search
MPDREIGEDASDTNLSSSSSSSSSSSYSAAGAWTDDHSFKMEKDPRKIARRYQLELCEKA
VEENVIVYLGTGCGKTHIAVMVIYELGPLILSPKKSVCIFLAPTVALVEQQALVIAKSIN
FKVATHCGGNRTVTTHSDWEREVSDNEVLVMTPQILLHNLQHCFIKMEWISLLILDECHH
AQEQSNHPYAQILKVFYKTDCVKGPRIFGMTASPVVGKGSFQSENLSKSINSLENLLNAK
VYSVESNVQLDGFVSSPIVKVYYYQTAMSEASQSTDVYENMLEDIKQRCLASLKQQIDTH
QTQVLLNMKKLLKRTHDNLIYSLVNLGLWGAIQAARIQLNSDRNVHQEPLEESNKSKICI
TYLSLAAEALSSKVAKDEKASELISLPALKEPFFSRKILQLIKILSAFRIEPHMKCIIFV
NRIVTARTLSCILNSLKLLESWKSDFLVGLSSGLKSMSRKNMKTILERFQSKELNLLVAT
KVGEEGLDIQTCCLVIRFDLPETVTSFIQSRGRARMPKSEYAFLVDRGNEKEMDLIEKFK
VNEDRMNLEITSRSSEETCPRLDDEVYRVQETGACISGGSSISLLYKYCSRLPHDEFFQP
KPEFQFNPVDEFGGTICRITLPANAPISEIVSSLLPSIEAAKKNACLKAVYKLHSLGVLN
NFLLPDSKKETEDDLSDEEFDFDKVEGEACSRGELYEMIVPDLFKQKWDPSKSCVHLQSY
YIRFVPHPADRTYKKFGLFMKSPLPIEAETMDFDLHLAHQRSVSVKIFPKGDANFDNDEI
RLAELFQEVALKMIFERRELIKEFVPLGLQDSFITSKSTFYLLLPINLDDSESVLSVDWA
TIRSCLSSPIFKAPSGSVEDMDPPVGSNLNLANGCWSIDDVKNSVVFATHKKQFYFVTDI
CHGRNGFSAIRKSITETHLESIYNSYGVELKHPVQPLLRLKPLCSVRNLLHNRKLENLEP
HELEEYFIEIPPELSQLKIKGLSKDIGSSLSLLPSVMHRVENLLVAIELKHMLSAFIPEI
AEVSGHRVLEALTTEKCQERFSLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSN
AVNNSNLFRLATRRNLQVYIRDQAFDPTQFFAFAHPCRVTCDEVAMKEVHSLDTCEIRCS
KGHHWLHKKTIADVVEALVGAFLVDSGFKGAIGFLKWIGINVDFESLQVRDACFASKRYM
PLTTCFDLAALESLLGYKFLHKGLLLQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSY
FFSVFPKLKPGQLTDLRSLSVNNKALANVAVSFSLQRFLFCESTYLHDAIKDYTNFVTAS
PLASASEGPKCPKVLGDLIESFLGALFLDCGFDLNHVWRIMLSFLDPVKNLSNLQLSPVK
ELLEYCQFYKWDREISATKKDGAFSVVLKVTKKGSCLTASATGRNKKESTKKAAQLMLTN
LKAHGHIKTSNPLEDVLKNSLRNEAKLIGYDEEPINVVDLDGLDVENLKIQDSFDEDLVT
ESKTSETSNSYIIKRVLTSAPTEKEESLPQNTIKEAGGSIIKTAKSLLRETCVANCWKPP
DFVCWEEEGPGHLKSFRYKVILEVVDAPNMTLECYGEAKTTKKCASEQAAQAALWCLEHT
GFLRP
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgccggaccgcgaaatcggcgaagatgcttctgacactaacctctcctcctcctcctcc
tcctcctcctcttcctcctactcggcggctggcgcttggacggatgatcactcattcaaa
atggagaaagatcctagaaaaatcgccaggaggtatcagctggagctgtgcgagaaagcg
gtggaggagaacgttatcgtgtatttgggaactggttgtgggaagactcacattgctgtg
atggttatatacgagcttggacctttgattctcagccctaagaagagtgtttgtatcttt
cttgctcctactgtcgctttggttgaacagcaagccttagtcattgcaaagtctatcaac
ttcaaagttgcaacacattgtggtggcaatcggactgtgactacccattctgactgggag
agagaggtttcagataatgaggttctcgttatgaccccacagatacttctgcataactta
cagcactgtttcatcaagatggagtggatttcccttctgatattggatgagtgtcaccat
gctcaagaacaaagcaaccatccttacgcacaaatcttgaaggtcttctataaaacagat
tgtgtaaaaggacctcgtatatttggaatgactgcatctccagttgttggcaaagggtct
tttcaatcagagaatttatcgaaaagcataaatagccttgaaaatttactcaatgcaaag
gtttactcagtggaaagcaatgtccagctggatggttttgtttcatctcctatagtcaaa
gtatattattatcagacagctatgagtgaagcatctcaatccaccgacgtatatgaaaac
atgctggaggacatcaaacagcggtgtttggcatcacttaagcagcagattgatacccat
caaacacaggtcctcttaaatatgaagaaacttctgaaaagaactcacgataatctcata
tatagtctggtgaatcttggcctctggggagcaatacaggctgctagaatccaactaaac
agtgaccgtaatgtacatcaagagcctttggaagagagtaataagtcaaagatatgcatc
acatatctttctctggctgccgaagccctttcttctaaagttgctaaagatgagaaagca
tctgaacttatcagcttaccagcgttgaaggaaccatttttctcaagaaagatattacaa
ctgattaaaatcctttcggcattcaggatagagccacacatgaagtgtataatatttgtc
aatcggattgtgactgcgaggacgttgtcatgcatactaaatagtttgaaacttctagag
tcttggaagtctgatttccttgttggacttagttctggactgaagagcatgtcaagaaag
aatatgaagacaattcttgaacggtttcaatctaaagagctcaatctactggttgccact
aaagttggcgaagaaggtcttgatattcagacatgctgtcttgtgatccgttttgatttg
ccagagactgttaccagcttcatacagtccagaggccgtgctcgaatgcctaagtctgaa
tatgcgtttctggtggacaggggaaacgagaaagagatggatctgattgaaaaatttaaa
gtaaatgaagatcgaatgaatctggaaattacttccagatcgtcagaggaaacttgtcct
agacttgatgatgaggtatacagagttcaggagacaggagcttgtatcagtggtggtagt
agcatctcccttctctataagtattgttctaggcttccacatgatgaattttttcagcct
aagccagagtttcaattcaatcctgttgacgaatttggtggaactatctgtcgcataact
ttacctgctaatgctcctataagtgaaatcgtcagttcactactaccttcgattgaagct
gctaaaaagaatgcttgtctaaaggctgtctataagttgcacagcctaggtgtacttaac
aattttctgttgccggattcaaaaaaagaaactgaggacgatttgtcagatgaagaattt
gattttgataaagttgaaggtgaagcctgttcacgaggtgaactgtatgagatgattgtt
cctgacttgtttaaacaaaagtgggatccatcgaagagctgtgtccatcttcaatcttac
tacataaggtttgtgcctcatcccgcggatcggacctacaagaagtttggtctcttcatg
aagtcacctcttcccattgaggctgagactatggacttcgatcttcaccttgctcatcaa
agatctgtaagtgtgaagatttttccaaaaggagacgccaatttcgacaatgatgagata
aggctagcggagcttttccaggaggttgccctgaaaatgatttttgaacggcgggagctg
attaaggaatttgttcccttggggctgcaagactcttttataactagcaaatctaccttc
taccttcttcttccaattaatctggatgattcagaaagtgttttatctgtggattgggcg
actattagaagctgcttgtcatccccaatcttcaaggctccgtctggctcagtagaagat
atggatcctcctgtgggatctaatttaaatcttgcaaatggctgctggagtattgatgat
gtgaagaacagtgtggttttcgcaacccacaaaaaacaattttattttgtcacggatatc
tgccatggaagaaatggattcagtgctattagaaaatcaatcaccgaaacccatctggaa
agcatatataattcgtatggcgtggaactcaagcatcctgtacagccactcttgcgtttg
aaaccactttgttctgttcggaacttgcttcataaccggaagctggagaatttggaacca
catgaacttgaagaatatttcatagagattcctccagagctttctcagttaaagataaaa
ggattatctaaagacattggaagttcgttatccttgctaccgtcagtcatgcaccgtgtg
gagaatttacttgtggctatcgaactgaaacacatgctgtctgcctttatccctgagata
gctgaagtttctggtcacagagtacttgaggcgctcacaacagagaaatgtcaggagcgc
ttttctcttgaaaggcttgaggtgcttggtgatgcattcctcaagtttgctgttagccga
cacctgtttctacaccatgataggcttgatgaaggagagttgactcgtagacgctcaaat
gctgtgaacaattccaacctgtttaggcttgcaaccaggaggaatttgcaggtttacatc
cgtgatcaagcattcgatcctacacagttctttgcatttgctcatccatgcagagtaacc
tgtgacgaggtagcaatgaaagaggttcattccttggatacttgtgaaatcagatgtagc
aaaggccatcattggttgcacaagaaaacgattgctgatgtggttgaggctcttgtggga
gcattcttagttgacagtggcttcaagggggccattggatttcttaaatggattggcata
aatgttgattttgagtccttgcaagtaagagatgcttgttttgcaagcaagcggtacatg
ccactgactacttgttttgatttggcggccttggaaagcctgcttggatataagtttctc
cacaaaggtctacttttacaagccttcatccatccatcttacaacaggcatggaggaggc
tgctaccagagattggagtttcttggggatgctgttctggactacttgatgacatcctat
tttttctcagtctttccgaaactgaaacctggtcaactgaccgatctaagatcgctctca
gtaaacaataaggcgcttgcgaatgttgctgtcagtttttcactacagagatttctattt
tgcgaatctacttatctccatgatgctataaaggattacaccaacttcgtgacagcgtca
ccgttggccagtgcatctgaaggtccaaaatgcccaaaggtccttggtgacttgatagaa
tcctttttgggagctcttttccttgactgtgggttcgacttgaatcatgtttggagaata
atgctatcttttttagatccagtgaaaaacttgtctaacctgcagcttagtcctgtgaaa
gaacttcttgaatattgccagttttacaagtgggatcgggagatatcagcgacaaagaag
gatggtgctttctctgttgtattaaaagtgaccaagaaaggttcttgccttacagcttct
gcaactggtcggaacaaaaaagagagtacaaaaaaggctgcacagctgatgcttacgaac
ctaaaggctcatgggcacataaaaacctcaaatccgttggaggatgttctgaagaatagc
ctccgaaatgaagcaaaattgattggctacgatgaagagcctataaatgttgtggatctt
gatgggctagacgttgaaaacctaaaaatccaagattcttttgacgaggatcttgtcact
gagagcaagactagtgaaacaagcaactcttacatcatcaaacgagttctcactagtgca
ccaactgaaaaagaagaaagccttcctcaaaataccatcaaagaagcaggtgggtcgatc
atcaaaactgcaaaatctctcttgcgagaaacatgtgttgccaactgttggaagccacca
gacttcgtatgttgggaggaggaaggaccaggccacctgaaatcgttcaggtataaggta
atcctggaagttgtagatgcccccaatatgacactggagtgttatggtgaagctaaaaca
actaagaaatgtgcatcagaacaggctgctcaagctgccttatggtgtctcgagcatact
ggattccttcgcccatga
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