Raphanus sativus (radish): 108815875
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Entry
108815875 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108815875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108815875
03012 Translation factors [BR:
rsz03012
]
108815875
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108815875
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108815875
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108815875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
ATPase
nSTAND3
AAA_19
AAA_16
Myosin_head
Motif
Other DBs
NCBI-GeneID:
108815875
NCBI-ProteinID:
XP_018443899
UniProt:
A0A6J0KA89
LinkDB
All DBs
Position
7:complement(6152335..6158248)
Genome browser
AA seq
1165 aa
AA seq
DB search
MRFTKRISSLFLSQATKLPTRSLLGNPSLCRSYYNVGAPISTSLISSRSGGDAAVTGLTY
HIRCRFIGYTAEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEREIVSRDKR
DRRDYEQISNLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVE
GLLQEHLDRQQLNLGKANENEADSQLPKQTEELPDESSDAFLDGSVMEKVLQRRSMRMRN
MQRAWQESPEGRTMLEFRKSLPSFKDKARLLQAIARNQVIVVSGETGCGKTTQLPQYILE
SEIESGRGAFCNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMRGKNTQLLF
CTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATL
NAELFSNYFGGAPTIHIPGFTHPVKAHFLEDVLEMTGYKLTSFNQVDDYGQEKTWKTQKQ
LMPRKRKNQITSLVEEALSKSTFESYSSRTRDSLSSWMPDCVGFNLIEAVLCHICRKERP
GAVLVFLTGWDDISSLRDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKI
VLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLL
PGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIAEFLSAALQAPEPLTV
QNAIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFHCFDPILTIVSGLSV
RDPFLLPQEKKDLALSAKLRFSAKDYSDHMALVRAFEGWKNAEREGSAYEYCWRNFLSAQ
TLQAIHSLRKQFNYILKEAGLVHDDSALNNKLSHNQSLVRAVICSGLFPGIASVVHRETS
MSFKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGA
LSTGVQVGHLKMLDGYIDFFMDPNLADSYVKLKEELDKLLQKKLEDPSVDIHKEGKYLML
AVQELVAGDQCEGRFVFGRDTKRPSQPQLAGGENKLSKDGTNPKSLLQTLLMRAGHSPPK
YKTKHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTDQYSGDA
DSPPDVTDNMLKLLGGKRRRRSKGK
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcacaaaacgaataagcagcctcttcctgtcgcaggccaccaagcttcctact
cgctctctgctgggaaacccatctttatgcaggtcttattataacgtcggcgctccgatc
tccacgtctctgatttcgagccggagtggtggtgatgctgctgtcacgggattgacctac
catatacgttgccgtttcatcgggtacaccgcggaacagttctcggatgatgagtacgag
tgtgaattcgaggaacataaggcttcatcttctgtggcgaatgttgatgaatggaagtgg
aagttaggcattctgttggccaatgatagcgaacgagagattgtttctagagataaaaga
gaccgaagggattatgagcagatctctaaccttgccaagagaatgggtctttacagtgag
atctatggaaaagtggttgttgcaagcaaggttcctcttcctaactacaggccagatttg
gatgataagcgaccacaacgggaggtggtacttcctttgagtttgcagagaagggtagag
ggactactccaggaacaccttgatagacagcagctaaacttaggaaaggctaatgaaaat
gaggctgattctcaacttcctaagcagactgaagaacttcctgatgaaagctctgatgcg
tttctcgatggttctgttatggagaaggtacttcagcggaggagtatgcggatgcgcaat
atgcagagagcctggcaggaatcacctgaggggcgtacaatgctggaattccgaaaatct
ttgccttcattcaaggacaaagcaagacttcttcaagctattgctcggaaccaggtaata
gtggtatctggggagactgggtgtggtaagacaactcaactgccacagtacattttggaa
tcggagatagagtctggtcgaggagcattctgcaacatcatttgtacacaacctcggagg
atatctgccatggcagttgcagaaagagtgtctgctgagagaggagaacctcttggtgaa
acggttgggtttaaagttcggctagaaggaatgagagggaagaatacccaacttctgttc
tgtacaagtggtattcttctcagacgactgcttagtgatcgaaatttgaatggcataaca
catgtttttgttgatgagattcacgaaaggggaatgaatgaagatttcttgataatagtg
ttaaaggagcttcttccacggcgtccagatttaagattggttcttatgagtgccactttg
aatgctgaactcttttctaactattttggaggagcacctacaattcacattccaggcttc
acacatccagtgaaggcacattttttggaggatgtactggaaatgacgggatataagttg
acctctttcaaccaagttgatgattatggccaagaaaagacttggaaaacgcaaaagcag
ttgatgccacgcaaaaggaaaaaccagatcacttctcttgttgaggaagctctgagcaag
tcaacttttgaaagctatagctcgaggactcgtgattcactctcgtcttggatgcctgat
tgcgtaggatttaatcttattgaggctgttctctgtcatatatgccgcaaagaacgtcca
ggagctgtattagtgtttttgacaggatgggatgatattagctccctgagggaccaaatt
aaagcacatcccctcctcggggatcccaatagggtcttgctgttgatgtgccacggttca
atggcaactgctgaacagagactcattttcgagcgagcacctcctaatattcgcaaaatt
gttcttgctacaaacatggcagaagctagtattacaataaacgatgtagttttcgtggtt
gactgtgggaaggcaaaagagaccacctatgatgctttgaacaatacaccttgtttgcta
ccctcatggatatctcaagcttctgctcgacagagaaggggtagagctggtcgtctgctt
ccgggagaatgctatcacctatatcctaaatgcgtgtatgaagctttttcggagtatcaa
cttcctgaacttctgagaactcctttaaactctctctgcctgcaaattaaaagtcttcag
gttgaaagcattgcagagttcttgtcagctgcacttcaggctccagagcctttgaccgtt
caaaatgctattggattcctgaaaatgatcggagcactggatgagaaggaaaatctgacg
gatcttggaaaactcttgtcgattctcccagttgatccaaagctggggaaaatgctcata
atgggtgccatcttccactgctttgatccgatcctgacaattgtatcagggctcagtgtc
agagatcctttccttctgcctcaagaaaaaaaagacttagctttatcagccaagttgaga
ttctcagcaaaagactacagtgaccatatggcactagttcgtgcctttgaagggtggaaa
aacgctgaaagagaaggatcggcttatgagtactgttggaggaattttttgtcagctcag
acgcttcaggcgatacattctctgaggaagcagttcaactatatcctgaaagaagctggc
ttagtacatgatgattcagctctcaacaacaagctaagtcacaatcagtctctggttcgc
gctgtcatttgctctggcttattccctggaatagcatctgttgtgcacagagagacttcc
atgtcgttcaagacaatggatgatggccaagtatcactatacgcgaattctgttaattcg
aggttcccgacgattccatacccttggcttgtctttggagagaaagtaaaggtcaatgca
gtgctcataagagactccaccggtgtccctgattccagtttgatcctttttggtggtgca
ctgagcaccggagtacaggtgggacatcttaaaatgcttgacgggtacattgacttcttc
atggatccaaatttggcagactcctacgtgaagctgaaggaagaactcgataagcttctt
cagaaaaagcttgaagatccaagtgtggacattcacaaagaaggcaagtacctgatgctc
gcagttcaagaacttgtggctggcgaccaatgcgaagggagattcgtgttcggccgtgac
acaaagaggccaagccaaccgcaattagcaggaggagagaacaaactctccaaagacggg
acgaacccgaagagtcttcttcagacacttttgatgagagctggacactcacctccaaag
tacaagaccaaacatctgaagacaaacgagtttagagcactcgtggagtttaaaggaatg
cagttcgttgggaagcctcagaggaacaaaacgctcgctgagaaagatgcagctgttgag
gccttggcttggttgactcatacctctgataatagtactgaccaatacagtggtgacgca
gattctccacctgatgttactgataacatgcttaaactccttggtggaaaacggcgcaga
cggtccaaaggcaagtag
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integrated database retrieval system
