Raphanus sativus (radish): 108816204
Help
Entry
108816204 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: probable cyclic nucleotide-gated ion channel 12
KO
K05391
cyclic nucleotide gated channel, plant
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
108816204
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rsz04040
]
108816204
Ion channels [BR:
rsz04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
108816204
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
DUF4231
Motif
Other DBs
NCBI-GeneID:
108816204
NCBI-ProteinID:
XP_018444275
UniProt:
A0A6J0K8C5
LinkDB
All DBs
Position
7:16844368..16847124
Genome browser
AA seq
664 aa
AA seq
DB search
MVSEEPQIEQRKRLHTFMTYRRRESVRYVTGNLGRSSTMLSLTESSKNVIGRINKMYKEM
KTLENWRKIVLFVCVVALAFDPLFFFIPVIDSNNFCFTFDKKLGAAVCVLRTFIDTFYVI
HIIFLFITERIAPRSQVSLRGELVLHSKAIPKRRFLFYFIVDIVSVLPIPQVVVLAFIPR
KERIAASLVTKEILKWIMVCQYIPRSIRIYPMFKEVTRASGTVAQTKWVGAALNLFLYLL
PSHVIGAFWYSNAVEKKYRCWREACAKEPGCNLASLYCARSGGNSRFLNTSCPLINPEQI
TDSTVFNFGMYIDALKSGVVESRYFPKKFFYCFWWGLRNLSALGQNLETSNSVGEIVFAI
IICVSGLLLFAVLIGNIQKYLQSTTIRVDEREEKNRDTEKWMSYRMLPESLKERIRIYED
YKWRETRGTEEEAFLRSLPKDLRLETKRHFYLELLKRVPWLQIMDDDWLLEALCDRVKSV
FYSANSYIVREGHPVEEMLIVTRGNLRSTSESSEYYYSILKAGDICGDLLLWVLDPRPSP
RLPTSTRTVMTLTDVEGFTLLPDDLKFVASHFNRLNNAXLRNMFRFYSERWRLWGACYIQ
AAWRLYSKRKLHETLRAEVGEQQIQQDTKFTLGATICVSRFAAKALRTLRTQKPDDPEFS
KPEA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggtctctgaagaaccacagattgagcaacggaagagactacatacattcatgacttat
cggaggagagaatccgtgaggtatgttactgggaatcttgggagatcttcaaccatgcta
tctctaaccgagagttccaagaatgttataggacgtatcaacaaaatgtacaaggagatg
aaaacccttgaaaactggaggaagattgtcctgttcgtttgcgtggttgctttagccttt
gatcctttgtttttctttatccctgtgattgattctaacaatttctgcttcacttttgac
aagaagcttggtgcagcagtttgtgtccttcgtacttttattgacactttctatgtgatt
catatcatctttctttttataaccgaacgcatcgctcctcgttctcaagtatccctaaga
ggcgagttagtcttgcattctaaggctataccaaaacgacgtttccttttctacttcatt
gttgacattgtctctgttctccccattcctcaggtggtggttcttgctttcattccaaga
aaggaacggattgctgcatcgctagtgacaaaggagatactgaaatggattatggtctgt
cagtatataccgagaagtatccgtatctatccgatgttcaaagaagtgacaagagcttct
ggtacggtagctcaaactaaatgggttggagctgctttaaaccttttcctttacttgttg
ccgagtcatgtgattggtgctttctggtactcgaatgcagttgagaaaaaatacagatgc
tggcgtgaagcgtgtgctaaggaacccggatgtaatctcgcgagtctgtactgtgcacgc
agcggaggcaacagtcgttttctgaacacttcatgtccattaatcaaccctgaacaaatc
acagactccacagtcttcaactttggtatgtacattgatgcattgaagtctggggtggta
gagtcaaggtattttcccaagaagttcttctactgcttctggtggggtctccggaatcta
agtgctctaggccaaaacctggagacaagtaactctgtaggggagatagtgtttgctatc
atcatctgcgtctctggtttactcttgtttgctgttctcattggaaatattcagaagtac
ttgcaatcaacgactattagagtagatgaaagggaggagaagaacagagacacagagaaa
tggatgtcctataggatgctaccagagagtctaaaggaacgcattaggatatatgaagat
tacaagtggcgtgaaaccagaggcacagaagaggaagcttttctcagaagccttcctaaa
gacctcaggcttgaaaccaaacgccacttttatctggagttattaaagcgtgttccttgg
cttcagattatggatgatgattggctactagaagcactgtgtgacagggtgaagtctgtt
ttctactcagcaaatagctacattgtgcgcgaaggccacccggttgaggaaatgctgatt
gtaacaagaggcaatctgagaagtacatcagaatctagtgaatactactattccatcctc
aaggcaggtgacatatgtggagatcttctcctttgggttcttgatccccgtccttctcct
cgccttcccacttcaaccagaaccgtaatgactcttacagatgttgaaggcttcactctc
ttgcctgatgatctcaagtttgtagcttctcatttcaatcgcttaaataacgctnaactc
aggaacatgttcaggttctattcagagcgttggcgattatggggagcatgctacatacaa
gcagcttggaggttatattcgaaaaggaagcttcatgagaccttaagggccgaagtaggc
gaacaacagattcaacaagacacaaaatttactctgggagcaactatttgtgtctcgaga
tttgctgccaaagctttgcgtactttgcgtactcaaaagccagacgaccctgagttttca
aagcctgaagcatag
DBGET
integrated database retrieval system
